PaperBLAST – Find papers about a protein or its homologs

 

Align XP_059602987.1 to PF04884 (UVB_sens_prot)

XP_059602987.1 has 484 amino acids

Query:       UVB_sens_prot  [M=241]
Accession:   PF04884.18
Description: Vitamin B6 photo-protection and homoeostasis
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    5.1e-60  189.2   0.0    6.9e-60  188.7   0.0    1.1  1  XP_059602987.1  


Domain annotation for each sequence (and alignments):
>> XP_059602987.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  188.7   0.0   6.9e-60   6.9e-60       3     164 ..      64     237 ..      62     244 .. 0.94

  Alignments for each domain:
  == domain 1  score: 188.7 bits;  conditional E-value: 6.9e-60
   UVB_sens_prot   3 eskslveslkdvfLPkGyPdsVtedYle.Yqiwdslqa.fassiagvlatqavlkg........vGVGdssasptaaallwvlkDglgrlgtilf 87 
                     +sks+ ++l +vfLP+GyP+sVt+dY++ Yq+ +++++ ++ s+ ++ ++  +l++        vGVG+++asptaa+ll++l+D+ gr++tilf
  XP_059602987.1  64 SSKSVQDFLVEVFLPAGYPHSVTDDYAPpYQTRRLIHEgLSPSLQQLDCWPPILESsaarlplgVGVGNADASPTAALLLHILQDTSGRIATILF 158
                     5789999********************77*****997626678888889999999777788877******************************* PP

   UVB_sens_prot  88 AarlgtsldselKkwrlvadvlndlamllellsplfp..slfllllclasvlkslagvaagatraslsqhfAkkgNlad 164
                     A+r+gt+l++e+K++rl+ad++ndlam+l++lsp++p  + ++++l++a vl++l+gva+g+++asls+hf+++gNla+
  XP_059602987.1 159 AHRVGTALEPECKMYRLAADIFNDLAMILDCLSPMIPagAPRVTVLSTAGVLRALCGVAGGSSKASLSAHFSRWGNLAE 237
                     ************************************98899*************************************9 PP



Or compare XP_059602987.1 to CDD or PaperBLAST