PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001031069.1 to PF05142 (DUF702)

NP_001031069.1 has 345 amino acids

Query:       DUF702  [M=151]
Accession:   PF05142.16
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    9.6e-68  213.6   4.6    2.2e-67  212.5   4.6    1.6  1  NP_001031069.1  


Domain annotation for each sequence (and alignments):
>> NP_001031069.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  212.5   4.6   2.2e-67   2.2e-67       2     150 ..     116     271 ..     115     272 .. 0.78

  Alignments for each domain:
  == domain 1  score: 212.5 bits;  conditional E-value: 2.2e-67
          DUF702   2 gisCqdCgnqakkdCahrrCRtCCksrgfdCatHvkstwvpaakrrerqqqlaalqaqaaeaeaeaassasssekskrpreesaaasassts... 93 
                     +++CqdCgnqakkdC h+rCRtCCksrgfdC+tHvkstwv+aakrrerq qla l a+  + ++++    ++ ++ k   ++++    s+++   
  NP_001031069.1 116 NMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVSAAKRRERQAQLAVLPAKRIRDANSR-GGGDDDDDDKEDEKNDSCGGGSALActr 209
                     689**************************************************9998877665554.2333333333333332333333333222 PP

          DUF702  94 .....attskseslpeevsseAvFrcvrvsavddgeeevaYqtavkigGhvfkGiLydqGle 150
                          ++  ++++lp+e+ss+AvFrc+rvs++dd++ee+aYqtav+igGhvfkGiLydqG++
  NP_001031069.1 210 vvnasSSGLETSHLPPEISSPAVFRCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPS 271
                     322223333446************************************************86 PP



Or compare NP_001031069.1 to CDD or PaperBLAST