PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001330898.1 to PF05142 (DUF702)

NP_001330898.1 has 331 amino acids

Query:       DUF702  [M=150]
Accession:   PF05142.12
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.6e-68  216.1   2.9    1.6e-68  216.1   2.9    1.4  2  NP_001330898.1  


Domain annotation for each sequence (and alignments):
>> NP_001330898.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2      0.98      0.98      57      63 ..      71      77 ..      62      87 .. 0.47
   2 !  216.1   2.9   1.6e-68   1.6e-68       2     149 ..     117     262 ..     116     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.98
          DUF702 57 qaqqaea 63
                    q+qq+++
  NP_001330898.1 71 QQQQQQQ 77
                    2222222 PP

  == domain 2  score: 216.1 bits;  conditional E-value: 1.6e-68
          DUF702   2 gisCqdCgnqakkdCahlrCRtCCksrgfdCetHvkstwvpaakrrerqqqlaalqaqqaeaeaaasassaeaskrpree.kaaaasatsls.at 94 
                     g sCqdCgnq+kkdC+h+rCRtCCksrg+dC+tHvkstwvpaakrrerqqql++ q+ q+        +s   +kr+re+  a ++s++ +  ++
  NP_001330898.1 117 GPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG------GS--VPKRQRERiPARSTSMAYTRiPS 203
                     569************************************************99988765533......22..34555542122222222222322 PP

          DUF702  95 ttkse....sfpaevsseavFrcvrvssvddaedevaYqtavkigGhvfkGiLydqGpd 149
                     +++s     +fp+evss+avFrcvrvssvdd+e+e+aY+tav+igGhvfkG+LydqGp 
  NP_001330898.1 204 NNTSGlevgNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPA 262
                     222213445************************************************96 PP



Or compare NP_001330898.1 to CDD or PaperBLAST