PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10103525 to PF05142 (DUF702)

VIMSS10103525 has 322 amino acids

Query:       DUF702  [M=150]
Accession:   PF05142.12
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    4.9e-66  208.0   0.2    4.9e-66  208.0   0.2    1.6  2  VIMSS10103525  


Domain annotation for each sequence (and alignments):
>> VIMSS10103525  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -1.9   0.2      0.23      0.23      76      88 ..      23      35 ..       9      70 .. 0.42
   2 !  208.0   0.2   4.9e-66   4.9e-66       2     149 ..      91     246 ..      90     247 .. 0.81

  Alignments for each domain:
  == domain 1  score: -1.9 bits;  conditional E-value: 0.23
         DUF702 76 krpreekaaaasa 88
                   ++++++    +s+
  VIMSS10103525 23 QQQKTNWVWYRSN 35
                   1111111111111 PP

  == domain 2  score: 208.0 bits;  conditional E-value: 4.9e-66
         DUF702   2 gisCqdCgnqakkdCahlrCRtCCksrgfdCetHvkstwvpaakrrerqqqlaalqaqqaeaea..aasassaeaskrpreekaaaasatsls... 92 
                    +isC+dCgnqakkdC+h+rCRtCCksrgfdC+tHv+stw+p+a+rrerqqql+++++     +    a  + ++ +kr+r  +   +s++s     
  VIMSS10103525  91 TISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSGsgGAGGGGSSIPKRHRDPTLPGTSSSSRLpsh 186
                    689*************************************************999887766555555566777889****6422222222222221 PP

         DUF702  93 ..atttksesfpaevsseavFrcvrvssvdd.aedevaYqtavkigGhvfkGiLydqGpd 149
                        ++ + sfp evss+a+Frcv++s+vdd ++ ++aYqt+v+igGh+fkGiLydqGp+
  VIMSS10103525 187 saGLEMGEASFPGEVSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPE 246
                    112233335**********************5666***********************98 PP



Or compare VIMSS10103525 to CDD or PaperBLAST