PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10111301 to PF05142 (DUF702)

VIMSS10111301 has 331 amino acids

Query:       DUF702  [M=150]
Accession:   PF05142.12
Description: Domain of unknown function (DUF702)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    1.6e-68  216.1   2.9    1.6e-68  216.1   2.9    1.4  2  VIMSS10111301  


Domain annotation for each sequence (and alignments):
>> VIMSS10111301  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.9   0.2      0.98      0.98      57      63 ..      71      77 ..      62      87 .. 0.47
   2 !  216.1   2.9   1.6e-68   1.6e-68       2     149 ..     117     262 ..     116     263 .. 0.79

  Alignments for each domain:
  == domain 1  score: -3.9 bits;  conditional E-value: 0.98
         DUF702 57 qaqqaea 63
                   q+qq+++
  VIMSS10111301 71 QQQQQQQ 77
                   2222222 PP

  == domain 2  score: 216.1 bits;  conditional E-value: 1.6e-68
         DUF702   2 gisCqdCgnqakkdCahlrCRtCCksrgfdCetHvkstwvpaakrrerqqqlaalqaqqaeaeaaasassaeaskrpree.kaaaasatsls.att 95 
                    g sCqdCgnq+kkdC+h+rCRtCCksrg+dC+tHvkstwvpaakrrerqqql++ q+ q+        +s   +kr+re+  a ++s++ +  +++
  VIMSS10111301 117 GPSCQDCGNQSKKDCSHMRCRTCCKSRGLDCPTHVKSTWVPAAKRRERQQQLSTGQQPQQLG------GS--VPKRQRERiPARSTSMAYTRiPSN 204
                    569************************************************99988765533......22..345555421222222222223222 PP

         DUF702  96 tkse....sfpaevsseavFrcvrvssvddaedevaYqtavkigGhvfkGiLydqGpd 149
                    ++s     +fp+evss+avFrcvrvssvdd+e+e+aY+tav+igGhvfkG+LydqGp 
  VIMSS10111301 205 NTSGlevgNFPPEVSSSAVFRCVRVSSVDDEEEEYAYKTAVSIGGHVFKGVLYDQGPA 262
                    22213445************************************************96 PP



Or compare VIMSS10111301 to CDD or PaperBLAST