PaperBLAST – Find papers about a protein or its homologs

 

Align NP_725706.1 to PF05254 (UPF0203)

NP_725706.1 has 88 amino acids

Query:       UPF0203  [M=69]
Accession:   PF05254.16
Description: Uncharacterised protein family (UPF0203)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.3e-28   83.4   2.1    6.4e-28   83.1   2.1    1.1  1  NP_725706.1  


Domain annotation for each sequence (and alignments):
>> NP_725706.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.1   2.1   6.4e-28   6.4e-28       1      62 [.       2      61 ..       2      68 .. 0.93

  Alignments for each domain:
  == domain 1  score: 83.1 bits;  conditional E-value: 6.4e-28
      UPF0203  1 aslapeCtelKekYdkCFnkWysekflkgkskeeeCeklfkeYqeCvqkalkekgiekllee 62
                 +s+++ C+elK++Yd+CFn+W+se flkg+++++ C+ +f+ YqeCv++a++e++ie  l e
  NP_725706.1  2 NSIGEDCNELKKQYDACFNSWFSEGFLKGQTDDSGCAPIFRVYQECVKRAMREQKIE--LRE 61
                 69******************************************************9..555 PP



Or compare NP_725706.1 to CDD or PaperBLAST