PaperBLAST – Find papers about a protein or its homologs

 

Align Q9CXL1 to PF05255 (UPF0220)

Q9CXL1 has 157 amino acids

Query:       UPF0220  [M=166]
Accession:   PF05255.15
Description: Uncharacterised protein family (UPF0220)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.7e-54  168.9   4.2    4.3e-54  168.6   4.2    1.0  1  Q9CXL1    


Domain annotation for each sequence (and alignments):
>> Q9CXL1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  168.6   4.2   4.3e-54   4.3e-54       7     166 .]       9     156 ..       5     156 .. 0.95

  Alignments for each domain:
  == domain 1  score: 168.6 bits;  conditional E-value: 4.3e-54
  UPF0220   7 rfskpelklensekrravgvylaGaLfalgfwllidaavvskkanasdvhvtfvdwipficstlgmlivnsieksrlsgds.....lgssgssvawkarvvL 103
              r+s++   ++++ekr+++++++aG+Lf++g+w++idaav++++      +++++++ +++++t+++l++n++++ +++gds     lg++g      ar++L
   Q9CXL1   9 RCSEC---MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRM----DQFNHSYHTCGVIATIAFLMINAVSNGQVRGDSysegcLGQTG------ARIWL 97 
              66555...89********************************99....9********************************8888888888......***** PP

  UPF0220 104 flGfallagglagsvvvlilkYvvkdytefptlgmGvanvlqNaliflssvvlwvgqnvedeY 166
              f+Gf+l +g+l++s+++l+  Yv k+++   ++++G+a+++qNa+if++ +v+++g+ +ed +
   Q9CXL1  98 FIGFMLAFGSLIASMWILFGGYVAKEKD---VVYPGIAVFFQNAFIFFGGLVFKFGR-TEDLW 156
              ************************9995...5*************************.***98 PP



Or compare Q9CXL1 to CDD or PaperBLAST