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Align F1RWH6 to PF05600 (CDK5RAP3)

F1RWH6 has 505 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
     5e-201  654.8   2.1   5.7e-201  654.6   2.1    1.0  1  F1RWH6    


Domain annotation for each sequence (and alignments):
>> F1RWH6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  654.6   2.1  5.7e-201  5.7e-201       2     502 .]       5     502 ..       4     502 .. 0.97

  Alignments for each domain:
  == domain 1  score: 654.6 bits;  conditional E-value: 5.7e-201
  CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqeivklYe 102
               q++pIDIq+skLldWLvdRrh++ +Wq+q+ +ireki++aiqdmpeseei+qllsg++i+Yfhc++Ive+lk tea++kniFGryssqrmkdWqeiv lYe
    F1RWH6   5 QHVPIDIQTSKLLDWLVDRRHCNLKWQSQVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRIVELLKGTEASTKNIFGRYSSQRMKDWQEIVALYE 105
               789************************************************************************************************** PP

  CDK5RAP3 103 kdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskai 203
               kdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++ +  aae++++++++ckq+gi+G+nvr+ELl+lvk+Lps +++i ++++s  l +ai
    F1RWH6 106 KDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAAAQS--LGEAI 204
               **********************************************************************************************..***** PP

  CDK5RAP3 204 eyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw..............dtsveaaeIdwdlekvee 290
               ++Y+a+v fv+++  e++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+  e+ e+     +iDw              ++s++aaeIdw+ +   e
    F1RWH6 205 DLYQACVGFVCES-PEEQVLPMLRFVQTRGNGTVYEWRTGTEPSVVERPYLEEPPEQVEED----AIDWgdfgvevasegpdsGISAQAAEIDWGIS-L-E 298
               ***********99.889**********************************7777666544....5*****************9999********43.3.3 PP

  CDK5RAP3 291 eaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqq 391
               ++ +e  ++eIdwg+ ++++++i+v e+g++      a+egva+g++al+lle++e+Rn+++d+L+ELe+FL+qR+vE+see+ ++ls+sqfq ap +lq 
    F1RWH6 299 SDSKEAGGDEIDWGD-DATALQITVLEAGTQ------APEGVARGSDALTLLEYPETRNQFIDELMELESFLSQRAVEMSEEA-DILSVSQFQLAPAILQG 391
               4457999*******9.99***********98......789******************************************8.***************** PP

  CDK5RAP3 392 qtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskr 492
               qtk ++ +m+s+ ++++ +ltn ++qhL++i++s+ryvdr++e L+qklk+ + l+ k++ + +k++e+ +++++lepkl+ l++kT+el+k+ie+d+skr
    F1RWH6 392 QTKAKTVSMVSALQDLIGRLTNLRMQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKELMVQKQQEALQEQAALEPKLDLLLEKTKELQKLIEADISKR 492
               ***************************************************************************************************** PP

  CDK5RAP3 493 ykgrpVnlmG 502
               y+grpVnlmG
    F1RWH6 493 YNGRPVNLMG 502
               *********9 PP



Or compare F1RWH6 to CDD or PaperBLAST