NP_001002105.1 has 507 amino acids
Query: CDK5RAP3 [M=502]
Accession: PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.9e-193 629.8 0.6 2.2e-193 629.6 0.6 1.0 1 NP_001002105.1
Domain annotation for each sequence (and alignments):
>> NP_001002105.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 629.6 0.6 2.2e-193 2.2e-193 2 502 .] 5 504 .. 4 504 .. 0.97
Alignments for each domain:
== domain 1 score: 629.6 bits; conditional E-value: 2.2e-193
CDK5RAP3 2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqe 96
qnlpIDIq+skLldWLvdRrh++ +Wq+++ +ireki++aiqdmpe+eei+qllsg++i+ fhc++I+e+lk tea++kniFGryssqrmkdWqe
NP_001002105.1 5 QNLPIDIQTSKLLDWLVDRRHCTLKWQSAVMTIREKINAAIQDMPENEEIKQLLSGSYIHHFHCLQIIEVLKGTEASTKNIFGRYSSQRMKDWQE 99
89********************************************************************************************* PP
CDK5RAP3 97 ivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekia 191
iv++YekdnvyLaE+A+ilvrnv+YE P+l+kq++k+qq+++el+r+e ++++ a+++++y++ackq+gikG+nv +EL++ vk+Lp ++e+
NP_001002105.1 100 IVSMYEKDNVYLAEMASILVRNVSYEGPALRKQVSKAQQLQQELSRRELECQSGSADMRERYYAACKQYGIKGENVARELQAQVKDLPVVLEETG 194
*********************************************************************************************** PP
CDK5RAP3 192 eelkseklskaieyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw.............. 272
+++++ l++aie+Y+af++fv+++ ++evlpll++vq+kgnttvye++tg+ p+ +e+p e++ + +ee +iDw
NP_001002105.1 195 KKAAC--LKDAIEFYTAFTKFVSDW--SEEVLPLLRFVQKKGNTTVYERKTGNVPKVVERPVMEEAPPDVVTEE---TIDWgdlgsgagtgseev 282
*****..******************..889*****************************************999...9********888888887 PP
CDK5RAP3 273 ..dtsveaaeIdwdlekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqR 365
++sv ++++dw+ + e+ + e ++++I+wg+se+a ++i+v + g+d +++gva+g++alslle++++R++++++L ELe+FL qR
NP_001002105.1 283 nfGISV-EDGVDWGIG--LESGTEETSGGGINWGDSESAPLEIEVVDVGTD------CPDGVARGEDALSLLENSQTRSQFINELKELEMFLCQR 368
764444.578888843..334567999**********************99......89************************************ PP
CDK5RAP3 366 lvElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreel 460
l+E++ee +++++sqfq ap+v+q+qt+++++ ml++v+++l+ lt+ ++qhL++i++s+ryv+r+ e L+qklk+++ + k +l ekr+e+
NP_001002105.1 369 LSEMREEG-DLVAMSQFQLAPSVIQAQTPQRVQVMLADVRELLNGLTSVRMQHLFMIQASPRYVERVSELLRQKLKQADIMVLKRGTLAEKRQEA 462
*******9.************************************************************************************** PP
CDK5RAP3 461 rnqlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502
+++++lep+++ l ++T+el+k+ie+d+skry++rpVnlmG
NP_001002105.1 463 LEEQAKLEPRIDLLAARTKELQKLIEADISKRYNNRPVNLMG 504
*****************************************9 PP
Or compare NP_001002105.1 to CDD or PaperBLAST