NP_001295112.1 has 392 amino acids
Query: CDK5RAP3 [M=502]
Accession: PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
2.5e-133 431.5 0.5 2.8e-133 431.4 0.5 1.0 1 NP_001295112.1
Domain annotation for each sequence (and alignments):
>> NP_001295112.1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 431.4 0.5 2.8e-133 2.8e-133 110 502 .] 2 389 .. 1 389 [. 0.96
Alignments for each domain:
== domain 1 score: 431.4 bits; conditional E-value: 2.8e-133
CDK5RAP3 110 EaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskaie 204
E++++lvrnv+YEiPslkkqiak+qq+++e++rKe++ + aae++++++++ckq+gi+G+nvr+ELl+lvk+Lps +++i + ++s l +ai+
NP_001295112.1 2 ELCSLLVRNVSYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQS--LGEAID 94
99*************************************************************************************..****** PP
CDK5RAP3 205 yYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw...........dtsveaaeIdwdlekv 288
+Y+a+vefv+++ ++vlp+l++vq+kgn tvyewrtg++ps +e+p+ e+ e+ + e+ eiDw ++ +e+ +Idw+ +
NP_001295112.1 95 LYQACVEFVCDS-PTEQVLPMLRYVQKKGNSTVYEWRTGTEPSVVERPQLEEPPEQVQ-ED---EIDWgdfgveavsdsGIVAETPGIDWGI-SL 183
************.778*****************************9999977666555.44...6************99888999******3.33 PP
CDK5RAP3 289 eeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfq 383
e+ ++++ +++Idwg+ +a+ +i+v e+g++ a+egva+g++al+lle++e+Rn+++d+L+ELe+FL+qR+vE+see+ ++ls+sqfq
NP_001295112.1 184 ES-EAKDAGADKIDWGDDAAAASEITVLETGTE------APEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEA-DILSVSQFQ 270
33.346778899*******************97......789******************************************8.********* PP
CDK5RAP3 384 sapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkT 478
ap +lq qtke++ +++s+ ++++ +lt+ ++qhL++i++s+ryvdr++e L+qklk+ + l+ k++ + ek++e+ +++++lepkl+ l++kT
NP_001295112.1 271 LAPAILQGQTKEKMLSLVSTLQQLIGRLTSLRMQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVEKQQEALQEQAALEPKLDLLLEKT 365
*********************************************************************************************** PP
CDK5RAP3 479 relkkeiekdlskrykgrpVnlmG 502
rel+k+ie+d+skry+grpVnlmG
NP_001295112.1 366 RELQKLIEADISKRYSGRPVNLMG 389
***********************9 PP
Or compare NP_001295112.1 to CDD or PaperBLAST