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Align Q96JB5 to PF05600 (CDK5RAP3)

Q96JB5 has 506 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.3e-195  636.9   0.4   1.5e-195  636.7   0.4    1.0  1  Q96JB5    


Domain annotation for each sequence (and alignments):
>> Q96JB5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  636.7   0.4  1.5e-195  1.5e-195       2     502 .]       5     503 ..       4     503 .. 0.97

  Alignments for each domain:
  == domain 1  score: 636.7 bits;  conditional E-value: 1.5e-195
  CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqeivklYe 102
               q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpeseei+qllsg++i+Yfhc++I+++lk tea++kniFGryssqrmkdWqei+ lYe
    Q96JB5   5 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYE 105
               789************************************************************************************************** PP

  CDK5RAP3 103 kdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskai 203
               kdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++++  aae++++++++ckq+gi+G+nvr ELl+lvk+Lps +++i +++++ +l +ai
    Q96JB5 106 KDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQ-SLGEAI 205
               *********************************************************************************************9.****** PP

  CDK5RAP3 204 eyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw..............dtsveaaeIdwdlekvee 290
               + Y+a v fv+++   ++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+  e+ + e+   +iDw              ++s+eaa+Idw+     e
    Q96JB5 206 DVYQASVGFVCES-PTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVA-ED---AIDWgdfgveavsegtdsGISAEAAGIDWG--IFPE 299
               ***********99.788*****************************9999976665554.44...6****************9999*********..5666 PP

  CDK5RAP3 291 eaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqq 391
               ++ ++  +++Idwg+ ++ +++i+v e+g++      a+egva+g +al+lle++e+Rn++ld+L+ELe+FL qR+vElsee+ +vls+sqfq ap +lq 
    Q96JB5 300 SDSKDPGGDGIDWGD-DAVALQITVLEAGTQ------APEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEA-DVLSVSQFQLAPAILQG 392
               77788999******9.999**********98......789******************************************8.***************** PP

  CDK5RAP3 392 qtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskr 492
               qtke++ +m+s  e+++ +lt+ +lqhL++i++s+ryvdr++e L+qklk+ + l+ k++ + +k++e+ +++++lepkl+ l++kT+el+k+ie+d+skr
    Q96JB5 393 QTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKR 493
               ***************************************************************************************************** PP

  CDK5RAP3 493 ykgrpVnlmG 502
               y+grpVnlmG
    Q96JB5 494 YSGRPVNLMG 503
               *********9 PP



Or compare Q96JB5 to CDD or PaperBLAST