Q96JB5 has 506 amino acids
Query: CDK5RAP3 [M=502] Accession: PF05600.16 Description: CDK5 regulatory subunit-associated protein 3 Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.3e-195 636.9 0.4 1.5e-195 636.7 0.4 1.0 1 Q96JB5 Domain annotation for each sequence (and alignments): >> Q96JB5 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 636.7 0.4 1.5e-195 1.5e-195 2 502 .] 5 503 .. 4 503 .. 0.97 Alignments for each domain: == domain 1 score: 636.7 bits; conditional E-value: 1.5e-195 CDK5RAP3 2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqeivklYe 102 q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpeseei+qllsg++i+Yfhc++I+++lk tea++kniFGryssqrmkdWqei+ lYe Q96JB5 5 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYE 105 789************************************************************************************************** PP CDK5RAP3 103 kdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskai 203 kdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++++ aae++++++++ckq+gi+G+nvr ELl+lvk+Lps +++i +++++ +l +ai Q96JB5 106 KDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQ-SLGEAI 205 *********************************************************************************************9.****** PP CDK5RAP3 204 eyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw..............dtsveaaeIdwdlekvee 290 + Y+a v fv+++ ++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+ e+ + e+ +iDw ++s+eaa+Idw+ e Q96JB5 206 DVYQASVGFVCES-PTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVA-ED---AIDWgdfgveavsegtdsGISAEAAGIDWG--IFPE 299 ***********99.788*****************************9999976665554.44...6****************9999*********..5666 PP CDK5RAP3 291 eaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqq 391 ++ ++ +++Idwg+ ++ +++i+v e+g++ a+egva+g +al+lle++e+Rn++ld+L+ELe+FL qR+vElsee+ +vls+sqfq ap +lq Q96JB5 300 SDSKDPGGDGIDWGD-DAVALQITVLEAGTQ------APEGVARGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEA-DVLSVSQFQLAPAILQG 392 77788999******9.999**********98......789******************************************8.***************** PP CDK5RAP3 392 qtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskr 492 qtke++ +m+s e+++ +lt+ +lqhL++i++s+ryvdr++e L+qklk+ + l+ k++ + +k++e+ +++++lepkl+ l++kT+el+k+ie+d+skr Q96JB5 393 QTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKR 493 ***************************************************************************************************** PP CDK5RAP3 493 ykgrpVnlmG 502 y+grpVnlmG Q96JB5 494 YSGRPVNLMG 503 *********9 PP
Or compare Q96JB5 to CDD or PaperBLAST