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Align Q9JLH7 to PF05600 (CDK5RAP3)

Q9JLH7 has 504 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   6.1e-195  634.7   2.6     7e-195  634.6   2.6    1.0  1  Q9JLH7    


Domain annotation for each sequence (and alignments):
>> Q9JLH7  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  634.6   2.6    7e-195    7e-195       2     502 .]       5     501 ..       4     501 .. 0.96

  Alignments for each domain:
  == domain 1  score: 634.6 bits;  conditional E-value: 7e-195
  CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkdWqeivklYe 102
               q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpes+ei+qllsg++i+Yfhc++Iv++lk tea++kniFGryssqrmkdWqei++lYe
    Q9JLH7   5 QHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKDWQEIISLYE 105
               789************************************************************************************************** PP

  CDK5RAP3 103 kdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLpslfekiaeelkseklskai 203
               kdn+yL E++++lvrnvnYEiPslkkqiak+qq++++++rKe++ +  aae++++++++ckq+gi+G+nvr+ELl+lvk+Lps +++i + ++s  l +ai
    Q9JLH7 106 KDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQDYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPSQLAEIGAGAQS--LGEAI 204
               **********************************************************************************************..***** PP

  CDK5RAP3 204 eyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw.............dtsveaaeIdwdlekveee 291
               ++Y+a+vefv+++   ++vlp+l++vq kgn tvyewrtg++ps +e+p+ e   e+  +e+   eiDw              +s+e+ +Idw+ +  e+ 
    Q9JLH7 205 DLYQACVEFVCDS-PTEQVLPMLRYVQPKGNSTVYEWRTGTEPSVVERPQLEDPPEQ-VQED---EIDWgdfgleavsdsgnIISAETPGIDWGIS-LES- 298
               *************.778****************************999999655554.4455...6**************99678999******43.333. PP

  CDK5RAP3 292 aeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlELeaFLkqRlvElseestsvlslsqfqsapevlqqq 392
               + ++  +++Idwg+ ++ + +i+v e+g++      a+egva+g++al+lle++e+Rn+++d+L+ELe+FL+qR+vE+see+ ++ls+sqfq ap +lq q
    Q9JLH7 299 ESKDAGADKIDWGD-NAVASEITVLETGTE------APEGVARGSDALTLLEYPETRNQFIDELMELEIFLSQRAVEMSEEA-DILSVSQFQLAPAILQGQ 391
               346778999****9.99999********97......789******************************************8.****************** PP

  CDK5RAP3 393 tkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkeklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskry 493
               tke++ +++s+ ++++ +lt+  lqhL++i++s+ryvdr++e L+qklk+ + l+ k+  + ek++e+ +++++lepkl+ l++kTrel+k+ie+d+skry
    Q9JLH7 392 TKEKMLSLVSTLQHLIGQLTSLDLQHLFMILASPRYVDRVTELLQQKLKQSQLLALKKDLMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRY 492
               ***************************************************************************************************** PP

  CDK5RAP3 494 kgrpVnlmG 502
               +grpVnlmG
    Q9JLH7 493 NGRPVNLMG 501
               ********9 PP



Or compare Q9JLH7 to CDD or PaperBLAST