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Align SwissProt::Q96JB5 to PF05600 (CDK5RAP3)

SwissProt::Q96JB5 has 506 amino acids

Query:       CDK5RAP3  [M=502]
Accession:   PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
   1.3e-195  636.9   0.4   1.5e-195  636.7   0.4    1.0  1  SwissProt::Q96JB5  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q96JB5  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  636.7   0.4  1.5e-195  1.5e-195       2     502 .]       5     503 ..       4     503 .. 0.97

  Alignments for each domain:
  == domain 1  score: 636.7 bits;  conditional E-value: 1.5e-195
           CDK5RAP3   2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkd 93 
                        q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpeseei+qllsg++i+Yfhc++I+++lk tea++kniFGryssqrmkd
  SwissProt::Q96JB5   5 QHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKD 96 
                        789***************************************************************************************** PP

           CDK5RAP3  94 WqeivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLps 185
                        Wqei+ lYekdn+yL E++++lvrnvnYEiPslkkqiak+qq+++e++rKe++++  aae++++++++ckq+gi+G+nvr ELl+lvk+Lps
  SwissProt::Q96JB5  97 WQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELLALVKDLPS 188
                        ******************************************************************************************** PP

           CDK5RAP3 186 lfekiaeelkseklskaieyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw..... 272
                         +++i +++++ +l +ai+ Y+a v fv+++   ++vlp+l++vq++gn tvyewrtg++ps +e+p+ e+  e+ + e+   +iDw     
  SwissProt::Q96JB5 189 QLAEIGAAAQQ-SLGEAIDVYQASVGFVCES-PTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVA-ED---AIDWgdfgv 274
                        **********9.*****************99.788*****************************9999976665554.44...6******** PP

           CDK5RAP3 273 .........dtsveaaeIdwdlekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddL 355
                                 ++s+eaa+Idw+     e++ ++  +++Idwg+ ++ +++i+v e+g++      a+egva+g +al+lle++e+Rn++ld+L
  SwissProt::Q96JB5 275 eavsegtdsGISAEAAGIDWG--IFPESDSKDPGGDGIDWGD-DAVALQITVLEAGTQ------APEGVARGPDALTLLEYTETRNQFLDEL 357
                        ********9999*********..566677788999******9.999**********98......789************************* PP

           CDK5RAP3 356 lELeaFLkqRlvElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklk 447
                        +ELe+FL qR+vElsee+ +vls+sqfq ap +lq qtke++ +m+s  e+++ +lt+ +lqhL++i++s+ryvdr++e L+qklk+ + l+
  SwissProt::Q96JB5 358 MELEIFLAQRAVELSEEA-DVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLA 448
                        *****************8.************************************************************************* PP

           CDK5RAP3 448 eklkdleekreelrnqlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502
                         k++ + +k++e+ +++++lepkl+ l++kT+el+k+ie+d+skry+grpVnlmG
  SwissProt::Q96JB5 449 LKKELMVQKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMG 503
                        ******************************************************9 PP



Or compare SwissProt::Q96JB5 to CDD or PaperBLAST