SwissProt::Q99LM2 has 503 amino acids
Query: CDK5RAP3 [M=502]
Accession: PF05600.16
Description: CDK5 regulatory subunit-associated protein 3
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
9.9e-198 644.0 2.9 1.1e-197 643.8 2.9 1.0 1 SwissProt::Q99LM2
Domain annotation for each sequence (and alignments):
>> SwissProt::Q99LM2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 643.8 2.9 1.1e-197 1.1e-197 2 502 .] 5 500 .. 4 500 .. 0.97
Alignments for each domain:
== domain 1 score: 643.8 bits; conditional E-value: 1.1e-197
CDK5RAP3 2 qnlpIDIqyskLldWLvdRrhvpkdWqkqlkairekiseaiqdmpeseeilqllsgeeinYfhckkIveilketeadskniFGryssqrmkd 93
q++pIDIq+skLldWLvdRrh++ +Wq+ + +ireki++aiqdmpes+ei+qllsg++i+Yfhc++Iv++lk tea++kniFGryssqrmkd
SwissProt::Q99LM2 5 QHVPIDIQTSKLLDWLVDRRHCNLKWQSLVLTIREKINTAIQDMPESQEIAQLLSGSYIHYFHCLRIVDLLKGTEASTKNIFGRYSSQRMKD 96
789***************************************************************************************** PP
CDK5RAP3 94 WqeivklYekdnvyLaEaAqilvrnvnYEiPslkkqiaklqqqleelerKeadlkrsaaeaaakyeeackqlgikGknvreELlelvkeLps 185
Wqeiv+lYekdn+yL E++++lvrnv+YEiPslkkqiak+qq+++e++rKe++ + aae++++++++ckq+gi+G+nvr+ELl+lvk+Lps
SwissProt::Q99LM2 97 WQEIVSLYEKDNTYLVELCSLLVRNVSYEIPSLKKQIAKCQQLQQEYSRKEEEGQAGAAEMREQFYHSCKQYGITGDNVRRELLALVKDLPS 188
******************************************************************************************** PP
CDK5RAP3 186 lfekiaeelkseklskaieyYkafvefvhtekkesevlpllkevqekgnttvyewrtgekpskieepeeevkkeeeeaeeeeseiDw..... 272
+++i + ++s l +ai++Y+a+vefv+++ ++vlp+l++vq+kgn tvyewrtg++ps +e+p+ e+ e+ + e+ eiDw
SwissProt::Q99LM2 189 QLAEIGAGAQS--LGEAIDLYQACVEFVCDS-PTEQVLPMLRYVQKKGNSTVYEWRTGTEPSVVERPQLEEPPEQVQ-ED---EIDWgdfgv 273
***********..******************.778*****************************9999977666555.44...6******** PP
CDK5RAP3 273 ......dtsveaaeIdwdlekveeeaeaeeeeaeIdwgeseeaevdisveesgedveeeesaaegvakgdealslledkeyRnkllddLlEL 358
++ +e+ +Idw+ + e+ ++++ +++Idwg+ +a+ +i+v e+g++ a+egva+g++al+lle++e+Rn+++d+L+EL
SwissProt::Q99LM2 274 eavsdsGIVAETPGIDWGI-SLES-EAKDAGADKIDWGDDAAAASEITVLETGTE------APEGVARGSDALTLLEYPETRNQFIDELMEL 357
****99888999******3.3333.346778899*******************97......789**************************** PP
CDK5RAP3 359 eaFLkqRlvElseestsvlslsqfqsapevlqqqtkeeieemlsevesvlslltnkklqhLlliktskryvdrlvesLeqklkaeeklkekl 450
e+FL+qR+vE+see+ ++ls+sqfq ap +lq qtke++ +++s+ ++++ +lt+ ++qhL++i++s+ryvdr++e L+qklk+ + l+ k+
SwissProt::Q99LM2 358 EIFLSQRAVEMSEEA-DILSVSQFQLAPAILQGQTKEKMLSLVSTLQQLIGRLTSLRMQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKK 448
**************8.**************************************************************************** PP
CDK5RAP3 451 kdleekreelrnqlselepkleklvkkTrelkkeiekdlskrykgrpVnlmG 502
+ + ek++e+ +++++lepkl+ l++kTrel+k+ie+d+skry+grpVnlmG
SwissProt::Q99LM2 449 ELMVEKQQEALQEQAALEPKLDLLLEKTRELQKLIEADISKRYSGRPVNLMG 500
***************************************************9 PP
Or compare SwissProt::Q99LM2 to CDD or PaperBLAST