PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1291052 to PF05656 (DUF805)

VIMSS1291052 has 215 amino acids

Query:       DUF805  [M=105]
Accession:   PF05656.14
Description: Protein of unknown function (DUF805)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    6.9e-23   67.4  15.4    9.1e-22   63.8  15.4    2.3  1  VIMSS1291052  


Domain annotation for each sequence (and alignments):
>> VIMSS1291052  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   63.8  15.4   9.1e-22   9.1e-22       1     105 []      20     180 ..      20     180 .. 0.70

  Alignments for each domain:
  == domain 1  score: 63.8 bits;  conditional E-value: 9.1e-22
        DUF805   1 yfdfkGRasRsefwwfvlfllllvivlallaavlaa....................aavasalsvvlallllvpslavtvRRlHDtgrsgwllllll 77 
                   y++fkGR++Rse+w+++l+ l+l++ ++++ ++                       ++++s+ ++v++l++++p+la++vRR+HD+ r+ ++ +++ 
  VIMSS1291052  20 YVNFKGRSRRSEYWYMALWHLILMVPAVCVLIINLFlffisiaadnetlivmsilmIILTSVYTFVYSLATFIPNLALCVRRFHDISRTMLFPMIMT 116
                   89************88888877777644444433335668889999****999999889999999999***********************665555 PP

        DUF805  78 v.......................p.......li.......alllllvllllpgtpgenryGpdp 105
                   v                       p       ++        +++++v+l+ +++p +n+yG++p
  VIMSS1291052 117 VfsiifyivlqiidsyydsdftlmPmglnillVLlyfvylgLTIVMIVFLCFDSKP-ANKYGESP 180
                   54333333443334443333333313333333002333444457999999999988.89***987 PP



Or compare VIMSS1291052 to CDD or PaperBLAST