PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS58618 to PF05728 (UPF0227)

VIMSS58618 has 258 amino acids

Query:       UPF0227  [M=187]
Accession:   PF05728.12
Description: Uncharacterised protein family (UPF0227)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.4e-10   27.6   0.0    2.7e-10   26.6   0.0    1.3  1  VIMSS58618  


Domain annotation for each sequence (and alignments):
>> VIMSS58618  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.7e-10   2.7e-10      41     173 ..      81     220 ..      73     226 .. 0.73

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.7e-10
     UPF0227  41 dpqqalkeleklvaelgddn..illvGssLGGyyatrlgerfglrq.vllnPalkplenlag.k..lgeeavqstqetyvleeyhiielkalelsrlkr 133
                 + q++l+  ++lva+   d+  i++vG s GGy+a+ l+++  +r  +l  Pa++ +e++   k  l++e + +      +++    +l+a + +r   
  VIMSS58618  81 NLQDLLAAYDRLVAHPAIDSeaIAVVGTSYGGYLAAILSQLRAVRWlALRVPAIYRDEDWLTpKllLDREDLSE-YRSSLIPAASNRALQACAGFR--- 175
                 5688999999999975544445***********************967778*******9964243368877666.455555666666666666655... PP

     UPF0227 134 perilvllskqDevldy......rravaefraaaeiveddgdHafk 173
                   ++l++ s  D  ++       r a+++ ++  ++++d  dHa++
  VIMSS58618 176 -GDVLLVESEFDSYVPHstimsfRAAFQQTHSLTHRIIDHADHALS 220
                 .45555555555544433333349999****************997 PP



Or compare VIMSS58618 to CDD or PaperBLAST