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Align VIMSS1223307 to PF05787 (DUF839)

VIMSS1223307 has 682 amino acids

Query:       DUF839  [M=524]
Accession:   PF05787.13
Description: Bacterial protein of unknown function (DUF839)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   3.3e-185  603.1   1.2   3.9e-185  602.9   1.2    1.0  1  VIMSS1223307  


Domain annotation for each sequence (and alignments):
>> VIMSS1223307  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  602.9   1.2  3.9e-185  3.9e-185       2     524 .]      74     639 ..      73     639 .. 0.96

  Alignments for each domain:
  == domain 1  score: 602.9 bits;  conditional E-value: 3.9e-185
        DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefd..qsaeaqekqvgynhDgmaffpls......rsadeglLvvNhEytseeilf...... 84 
                   gf+++ ++++d+++vpegy+a++l++wG++++ ++p+f   ++ ++q +qvg++hDgm+ffp++      +s++eglLv NhEy++++ ++      
  VIMSS1223307  74 GFKAIPVSAEDKLVVPEGYTARPLLAWGTPITGTYPQFKleNTGAEQGMQVGSHHDGMHFFPIEgkdpwqGSSTEGLLVFNHEYVEPRFMHaaavgq 170
                   7999***********************************99999*******************999999888889********************** PP

        DUF839  85 .......ekekpspvtaelvekelaalGvtvveisrk.agkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpW 173
                           ++   +++ ++v kel+ +Gv++v+i+++ +g+w+vvrd   nrrit  t m++ GP++gs+ +kt+ ++eg+ + GT+nNCa+G+TpW
  VIMSS1223307 171 kldsdlyPTNPDGSRDPDQVLKELNGHGVSIVHIKQQgDGSWEVVRDRL-NRRITGLTLMEIQGPVRGSDFVKTKFSPEGTMTRGTLNNCAHGVTPW 266
                   **9999855555678899****************9999*******8865.*********************************************** PP

        DUF839 174 GtyLtcEEnfngyfggeea.......vkadqkryGit.gttgy............erFdva...........nepkkfGyvvEvdpvdprstpvkrt 239
                    tyLtcEEn+ gyf+++ +       +++++kryG++ +t++y             rF+++           nep++fG+vvE+dp dp stp+krt
  VIMSS1223307 267 NTYLTCEENWAGYFSNTSKgpdqkpnLPREHKRYGVStETSRYgwelasnkadefIRFNATptaadatqdyrNEPNTFGWVVEIDPFDPSSTPKKRT 363
                   ***************9966699999999*********9***************9988888888888889999************************* PP

        DUF839 240 alGrfkHEaaavvveddkr.vvvYlgdDerkeylYkFvsndrvgtgnskansaLldeGtLyvakfnedgtveWvplvegqggltaengfadqaevlv 335
                   alGrf+HE++++    +++ +v+Y+gdD r+ey+Yk+vs+++++++   a  +Lld+GtLyvakfnedgt+eW+plv+g++glt+engf++qa+vlv
  VIMSS1223307 364 ALGRFAHEGVVFQPPVEGQpIVAYMGDDARFEYIYKYVSAEPYRKE--TAGGHLLDNGTLYVAKFNEDGTGEWLPLVFGKNGLTPENGFTSQADVLV 458
                   ************9766665599*********************977..799********************************************** PP

        DUF839 336 ktrlaadkvGatkmdrpEdievnPttgevyvvltnnkkrdeskidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedaka.asaesse 431
                   +tr aad vGatkmdrpE+ +v P+t  vy++ltnn++r+++++++anpr+knk+G+i+r+ e++++ +at+f+wdlf+laG+ped+++   ++ +e
  VIMSS1223307 459 NTRTAADFVGATKMDRPEWGAVDPQTRMVYFTLTNNSRREQDQVNAANPRPKNKWGHIIRWKEANDRPQATRFEWDLFVLAGPPEDSRKlSGQPLNE 555
                   ***************************************************************************************99899***** PP

        DUF839 432 gndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                   +n+++spD+l+fd++ rlwi+tD s+s+ +          +++a ++Gnn +l++d+++ge++rflt+p g E+tGv+++Pd++t+f+nvqhPg
  VIMSS1223307 556 DNIFNSPDGLWFDASRRLWIQTDTSDSNLN---------KEEFA-PFGNNqMLAADPDTGEIRRFLTGPIGQEITGVVTTPDQRTMFINVQHPG 639
                   **************************9876.........78887.99**********************************************9 PP



Or compare VIMSS1223307 to CDD or PaperBLAST