PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1305955 to PF05787 (DUF839)

VIMSS1305955 has 686 amino acids

Query:       DUF839  [M=524]
Accession:   PF05787.13
Description: Bacterial protein of unknown function (DUF839)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
   1.3e-185  604.5   1.7   1.5e-185  604.3   1.7    1.0  1  VIMSS1305955  


Domain annotation for each sequence (and alignments):
>> VIMSS1305955  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  604.3   1.7  1.5e-185  1.5e-185       2     524 .]      74     639 ..      73     639 .. 0.95

  Alignments for each domain:
  == domain 1  score: 604.3 bits;  conditional E-value: 1.5e-185
        DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefd..qsaeaqekqvgynhDgmaffpls......rsadeglLvvNhEytseeilf...... 84 
                   gf+++ ++++d+v+vpegy+a++l++wG++++ ++p+f   ++ ++q +qvg++hDgm+ffp++      + +deglLv NhEy++++ ++      
  VIMSS1305955  74 GFKAIPVSAEDKVVVPEGYTARPLLAWGTPITGTYPQFKleNTGAEQGMQVGSHHDGMHFFPIDgkdpwqGRSDEGLLVFNHEYVEPRFMHaaakgq 170
                   7999***********************************99999********************9999988899*********************** PP

        DUF839  85 .......ekekpspvtaelvekelaalGvtvveisrk.agkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpW 173
                            +   +++ ++v kel+a+Gv++v+i+++ +g+w+vvrd   nrrit  t m++ GP++gs+ +kt+ +++g+ + GT+nNCa+G+TpW
  VIMSS1305955 171 kfddedyPVNPDGSRDPDQVLKELNAHGVSIVHIKQQgDGNWTVVRDRL-NRRITGLTLMEIHGPVRGSDFVKTKFSPDGTMTRGTLNNCAHGVTPW 266
                   **9877544445578899****************9999*******8865.*********************************************** PP

        DUF839 174 GtyLtcEEnfngyfggeea.......vkadqkryGit.gttgy............erFdva...........nepkkfGyvvEvdpvdprstpvkrt 239
                    tyLtcEEn+ gyf ++ +       +++++kryG++ +t++y             rF+++           nep++fG+vvE+dp dp stp+krt
  VIMSS1305955 267 NTYLTCEENWAGYFTNTSKgpdqkpnLPREHKRYGVStETSRYgwelasnkadefIRFNATptgadptqdyrNEPNTFGWVVEIDPFDPSSTPKKRT 363
                   **************99966699999999*********9***************9988998888999999999************************* PP

        DUF839 240 alGrfkHEaaavvveddkr.vvvYlgdDerkeylYkFvsndrvgtgnskansaLldeGtLyvakfnedgtveWvplvegqggltaengfadqaevlv 335
                   alGrf+HE++++    +++ +v+Y+gdD r+ey+Yk+vs+++++++   a  +Lld+GtLyvakfnedgt+eW+plv+gq+glt+engf++qa+vlv
  VIMSS1305955 364 ALGRFAHEGVVFQPPVEGQpIVLYMGDDARFEYIYKYVSAEPYRKE--TAGGHLLDKGTLYVAKFNEDGTGEWIPLVFGQNGLTPENGFTSQADVLV 458
                   ************9766666599*********************977..799********************************************** PP

        DUF839 336 ktrlaadkvGatkmdrpEdievnPttgevyvvltnnkkrdeskidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedaka.asaesse 431
                   +tr aad vGatkmdrpE+ +v P+t  vy++ltnn++r+++++++anpr+knk+G+i+r+ e++++ +at+f+wdlf+laG+ped+++   ++ ++
  VIMSS1305955 459 NTRTAADFVGATKMDRPEWGAVDPQTRMVYFTLTNNSRREQDQVNAANPRPKNKWGHIIRWKEANDRPQATRFEWDLFVLAGPPEDSRTlSGQPLNA 555
                   ***************************************************************************************99999***** PP

        DUF839 432 gndlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                   +n+++spD+l+fd++ rlwi+tD s+s+ +      +G+   +    Gnn +l++d+++ge++rfl +p g E+tGv+++Pd++t+f+nvqhPg
  VIMSS1305955 556 DNIFNSPDGLWFDASRRLWIQTDTSESNLN------QGDFAPF----GNNqMLAADPDTGEIRRFLVGPIGQEITGVVTTPDQRTMFINVQHPG 639
                   **************************9987......7765555....7777******************************************9 PP



Or compare VIMSS1305955 to CDD or PaperBLAST