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Align VIMSS246254 to PF05787 (DUF839)

VIMSS246254 has 465 amino acids

Query:       DUF839  [M=524]
Accession:   PF05787.13
Description: Bacterial protein of unknown function (DUF839)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   5.3e-100  322.0   0.2    1.8e-80  257.6   1.0    2.3  2  VIMSS246254  


Domain annotation for each sequence (and alignments):
>> VIMSS246254  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   61.6   0.0   4.4e-21   4.4e-21       2     114 ..      47     146 ..      46     153 .. 0.90
   2 !  257.6   1.0   1.8e-80   1.8e-80     156     524 .]     153     454 ..     147     454 .. 0.89

  Alignments for each domain:
  == domain 1  score: 61.6 bits;  conditional E-value: 4.4e-21
       DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefdqsaeaqekqvgynhDgmaffpls...rsadeglLvvNhEytseeilfekekpspvtael 96 
                  g+gpl++++d+l+++p+g++++vl+r Gd+l +g           e  v++nhDgm++fp++   r+  +++Lv+NhE+ ++  +     p p+  +l
  VIMSS246254  47 GYGPLVPDPDGLLDLPKGFRYRVLSREGDRLRSG-----------EGPVPSNHDGMSAFPGRssgRHGRTTHLVRNHENREDGRV-----PVPTVGGL 128
                  89********************************...........678*************9555555588**********9997.....7******* PP

       DUF839  97 vekelaalGvtvveisrk 114
                  +++++ ++G+t+++++ +
  VIMSS246254 129 TYDPQGKGGCTALTLDSR 146
                  ************998655 PP

  == domain 2  score: 257.6 bits;  conditional E-value: 1.8e-80
       DUF839 156 gvkilGTanNCagGtTpWGtyLtcEEnfngyfggeeavkadqkryGitgttgyerFdvanepkkfGyvvEvdpvdp.rstpvkrtalGrfkHEaaavv 252
                   v+i+GTa+NCagG+TpW+t+LtcEE++++                  gt+gy        +k++G+++Evdpvdp r+ +v++ta+Grf+HEa+av 
  VIMSS246254 153 RVAIAGTAVNCAGGPTPWHTWLTCEETEDRA-----------------GTNGY--------TKDHGFIFEVDPVDPhRTGAVPLTAMGRFQHEAIAV- 224
                  6789************************966.................35677........89*************9999*****************. PP

       DUF839 253 veddkrvvvYlgdD...erkeylYkFvsndrvgtgns....kansaLldeGtLyvakfned....gtveWvplvegqggltaengfadqaevlvktrl 339
                    d++r+vvY+++D   + ++++Y+F++++++g ++s     + +a++  G+ ++++++e+    ++veWv+++++          ad + +    r+
  VIMSS246254 225 --DPRRGVVYETEDafeRPFGLFYRFLPEKPLGGRGSlragGRLQAMRVPGVPDLSSIQETgatfDRVEWVDVPDP---------LADGTPI----RF 307
                  ..**************999*************98865554455555555666666666666999999*******99.........8999998....55 PP

       DUF839 340 aa.dkvGatkmdrpEdievnPttg...evyvvltnnkkrdeskidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedakaasaessegn 433
                  ++  + G+t+++++E+++     +   +vy+v+++++        s++++a+++yGqi+r+++e+r       +++l++++G+++d+         + 
  VIMSS246254 308 QDfGRGGITHAQKLEGCY-----WggrSVYFVSSFAH--------SEEGSAADHYGQIWRYDPERR-------RLTLVIVFGPDTDV---------QL 376
                  666999************.....44679********6........889****************99.......**********7777.........55 PP

       DUF839 434 dlespDnlafdpaGrlwiatDgsgskdellgvtaeGkvynlarndGnnvltsdaargevkrfl.tepegsEvtGvtfsPdgktlfvnvqhPg 524
                    espDn++++p+G+l++++Dg+g+++ ++gvt++G+vy++a             rg+++  + +epe+ E++GvtfsPdg+t++vn+++Pg
  VIMSS246254 377 PGESPDNICLAPSGGLMVCEDGNGAQH-VFGVTRRGEVYAMA-------------RGAQNIGTeEEPEWGEFAGVTFSPDGDTMYVNCYTPG 454
                  99**********************987.6************9.............45666666699*************************8 PP



Or compare VIMSS246254 to CDD or PaperBLAST