PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS3627794 to PF05787 (DUF839)

VIMSS3627794 has 683 amino acids

Query:       DUF839  [M=524]
Accession:   PF05787.13
Description: Bacterial protein of unknown function (DUF839)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
     4e-138  447.8   9.7    7.3e-92  295.2   4.7    2.0  2  VIMSS3627794  


Domain annotation for each sequence (and alignments):
>> VIMSS3627794  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  155.6   0.2   1.4e-49   1.4e-49      15     203 ..       2     215 ..       1     234 [. 0.86
   2 !  295.2   4.7   7.3e-92   7.3e-92     208     524 .]     278     639 ..     249     639 .. 0.85

  Alignments for each domain:
  == domain 1  score: 155.6 bits;  conditional E-value: 1.4e-49
        DUF839  15 avpegyeakvlvrwGdklfagapefd....qsaeaqekqvgynhDgmaffplsrsad........eglLvvNhEytseeilf....ekekpspvtae 95 
                   +vpegyea+v+ + Gd + + + ++d     s    + + g  hDgm++f l+ s +        +glLv+NhEy+++  l+    + +   ++ ++
  VIMSS3627794   2 TVPEGYEANVIYALGDSINPRVGDWDdnniPSGPSFQFRSGDCHDGMHYFGLNTSTNrfdetvsaQGLLVMNHEYINQTFLHpkgpT-KVDGRRPED 97 
                   79************************87665556667788************955555555666699**************977633.334456678 PP

        DUF839  96 lvekelaalGvtvveisrk..agkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpWGtyLtcEEnfngyfgge 190
                   +v  e +a+Gv+vv+i++   ++k ++v++s +nrrita t m+ +G aags+ll t+ ++ g+++ GT+nNC +G+TpWGtyLt EEnf gyf  +
  VIMSS3627794  98 EVIRETNAHGVSVVHIKKDptTQKVEIVKNSIFNRRITASTVMEFAGAAAGSSLLATRFSPAGRQTRGTHNNCGNGYTPWGTYLTTEENFIGYFQRS 194
                   899999**********9999999*********************************************************************88765 PP

        DUF839 191 ..ea......vkadqkryGit 203
                     ++      +k   kryG+ 
  VIMSS3627794 195 gsDEyartdaEKIALKRYGLG 215
                   423377877777788999986 PP

  == domain 2  score: 295.2 bits;  conditional E-value: 7.3e-92
        DUF839 208 y......erFdva...........nepkkfGyvvEvdpvdprstpvkrtalGrfkHEaaavvveddkrvvvYlgdDerkeylYkFvsndrvgtgns. 286
                          +r++++           n p++fG++vE+dp d r +pvkrt lGrf+HE  a +   ++ +++Y+gdD+r+ey+YkFvs    +t++  
  VIMSS3627794 278 VesqdlyDRWNADvkaaqatqdyrNGPNTFGWMVEIDPFDGRQNPVKRTSLGRFAHEDSACRAVVGQPLAFYMGDDSRGEYIYKFVSTAVWDTKDIn 374
                   133333444444444555555555****************************************************************999988766 PP

        DUF839 287 ...kansaLldeGtLyvakfnedgtveWvplvegqggltaeng...fadqaevlvktrlaadkvGatkmdrpEdievnPttgevyvvltnnkkrde. 376
                       a  + ++ G Lyvakfn+dg+++W++l +g++gl++ n+   f++qa+v+ ++rlaad vGatkmdrpE++ vnP++ge+yv+ltnn++r++ 
  VIMSS3627794 375 ggyTAGDKYMNAGKLYVAKFNNDGSGQWIELAYGKNGLNESNTtypFKSQADVVTFARLAADSVGATKMDRPEWCTVNPVNGEIYVTLTNNSNRGKd 471
                   677888999*******************************888789************************************************997 PP

        DUF839 377 ...........ski.dsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedaka.asaessegndlespDnlafdpaGrlwiatDgsgskd 460
                              + +    + ++ n +G+i+r+ e++++++a++f+wd++l   + + a++ +  + +++nd++spD+++fdp+G lwi tD  + +d
  VIMSS3627794 472 yatdaanprnyTDLyAGTKEQKGNVNGHIIRFKETDDKTTAETFKWDIYLFGAEASMASNiNLSGLTDNNDFSSPDGMWFDPRGVLWIETDDGAYTD 568
                   77666655544222445555667889***************************9998888899****************************999888 PP

        DUF839 461 e........llgvtaeGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                            l g+  +G + +    +G+  ++ +  +  +++rfl +p+++E+tG++++Pd k++f+nvqhPg
  VIMSS3627794 569 VtncmmlaaLPGQIGDGGTATT--SNGQQtITGAKVTDATLRRFLVGPKQCEITGIAMTPDYKAIFINVQHPG 639
                   7899876555555555555555..57878677777788899*******************************9 PP



Or compare VIMSS3627794 to CDD or PaperBLAST