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Align VIMSS46085 to PF05787 (DUF839)

VIMSS46085 has 593 amino acids

Query:       DUF839  [M=524]
Accession:   PF05787.13
Description: Bacterial protein of unknown function (DUF839)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   1.9e-172  561.0   3.9   2.2e-172  560.8   3.9    1.0  1  VIMSS46085  


Domain annotation for each sequence (and alignments):
>> VIMSS46085  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  560.8   3.9  2.2e-172  2.2e-172       2     524 .]      36     562 ..      35     562 .. 0.96

  Alignments for each domain:
  == domain 1  score: 560.8 bits;  conditional E-value: 2.2e-172
      DUF839   2 gfgplaaklddlvavpegyeakvlvrwGdklfagapefd.......qsaeaqekqvgynhDgmaffplsrsadeglLvvNhEytseeilfekekpspvt 93 
                 gf+++ a+++d+v vp+gyeakvl++wGd+lf++a+ +d       +++++ + ++g  +Dgm+ffpl  s+++g+L+vN+Ey+++ei+f ++++++++
  VIMSS46085  36 GFKAVSASTQDKVIVPQGYEAKVLISWGDPLFSKAKPYDenkiidmNAVKNAHLVFGDDNDGMSFFPL--SKNRGILAVNNEYINPEIMF-NHHGKNLS 131
                 799*****************************************999999999***************..7******************9.99****** PP

      DUF839  94 aelvekelaalGvtvveisrkagkwqvvrdsklnrritantemrlsGPaagsellktsadaegvkilGTanNCagGtTpWGtyLtcEEnfngyfggeea 192
                 +e+   e+a +Gv+++ei++k ++w+vv dsk+nrri ant+m++sG a  +e+lk     +   + GT+ NCa+G+TpWGty+tcEEnf+++fg+ ++
  VIMSS46085 132 KEDILYEQASVGVSILEIEKKGDDWTVVLDSKYNRRIDANTKMQVSGAAK-KEVLK-----NEKFVHGTFANCANGQTPWGTYITCEENFDDFFGSLDE 224
                 ***********************************************877.999*9.....566789****************************9955 PP

      DUF839 193 ...vkadqkryGitgttgy......erFdva...nepkkfGyvvEvdpvdprstpvkrtalGrfkHEaaavvveddkrvvvYlgdDerkeylYkFvsnd 279
                     +++ kryG+++t+ y      erFd+a   +e+++fG++vE++p d++stpvkrt lGrfkHE+a+++ve+d+ v+vY+gdDe +e++YkFvs++
  VIMSS46085 225 nleFNDSLKRYGFNKTSLYgwekfdERFDLAknmDEANRFGWIVEINPFDAQSTPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKH 323
                 5889999**************99999999999999**************************************************************** PP

      DUF839 280 rvgtgnskansaLldeGtLyvakfned.....gtveWvplvegqggltaengfadqaevlvktrlaadkvGatkmdrpEdievnPttg..evyvvltnn 371
                 ++++g  +++s++ldeG+Lyv +fn +     g+++W+ l++g++ l+++ngf++qa+vl++trlaa+ vGat+mdr E+i+ + + g  ev+ +ltnn
  VIMSS46085 324 KYKKG--ADTSKILDEGILYVGQFNGNvgdfkGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVGATPMDRCEWIASHKQSGskEVFATLTNN 420
                 ***88..799************************************************************************99999899********* PP

      DUF839 372 kkrdeskidsanpraknkyGqivrlieesrdvaatkftwdlfllaGdpedaka...asaessegndlespDnlafdpaGrlwiatDgsgskdellgvta 467
                 k+r  ++ ++anpr kn yGqi+++++++  + ++ ftw++f+laG+p +++     s++++++n+++spD+l fd  Grlwi+tDgs s++       
  VIMSS46085 421 KNR--QEPNAANPRTKNVYGQILKWMPKNS-HKDDDFTWEIFALAGNPDNQQGlykGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSNKD------ 510
                 *88..77799*****************966.*****************999999988899999**************************9876...... PP

      DUF839 468 eGkvynlarndGnn.vltsdaargevkrfltepegsEvtGvtfsPdgktlfvnvqhPg 524
                   +     +  Gnn +l++++++ge++rflt+p  +E+tG++fs d +t+fv++qhPg
  VIMSS46085 511 --EY----ESMGNNcMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPG 562
                 ..33....3458888******************************************9 PP



Or compare VIMSS46085 to CDD or PaperBLAST