PaperBLAST – Find papers about a protein or its homologs

 

Align YP_111366.1 to PF05853 (BKACE)

YP_111366.1 has 1125 amino acids

Query:       BKACE  [M=274]
Accession:   PF05853.12
Description: beta-keto acid cleavage enzyme
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.2e-29   89.6   0.0    6.3e-28   83.9   0.0    2.8  1  YP_111366.1  


Domain annotation for each sequence (and alignments):
>> YP_111366.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.9   0.0   6.3e-28   6.3e-28      14     273 ..     195     526 ..     187     527 .. 0.77

  Alignments for each domain:
  == domain 1  score: 83.9 bits;  conditional E-value: 6.3e-28
                  -CCC-TTS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-.................EE--HHHHHHHHHHHHHHHTTSEEEE-SSTTTTG-HHH.. CS
        BKACE  14 tkednpavPvtpeeiaeeaveaaeaGAaivHlHaRdpedgr.................psldpelyrevlarirekepdviinlttggastmsaee.. 92 
                   k+++p++P+t++ i+++  ea ++GAa+vHlH R  +d +                 +   +++y +++    + ep +i+nl+t+++   +a++  
  YP_111366.1 195 GKARSPYLPITADGIVDASREALREGAAVVHLHTRATDDQAtlaipglntpigigsqrNHIVLDDYDRIVPTMLDLEPSAILNLSTSARGDRRASQsp 292
                  6899*******************************976666899********998876677789***********************88855443345 PP

                  .HHTHHHH.....H--SEEEEE-S-EEEB-SGCEE---HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-..SSEEEEEEE--...... CS
        BKACE  93 .rlavlea.....lkpemasldlgslnfglkdlvfentpedieellrrmaeagvkpeievfdvghlrnvkrlieeGllk..gpllvqfvlgv...... 176
                   r a+l++     l+p++as+ +g + f+ +   ++n+++++++ l+ +ae gv+peievf+   ++n  +l++  l+k   p+l+ +v  v      
  YP_111366.1 293 lRRAHLKRyghaqLAPDVASFSPGPVVFQ-AGGGYDNPNAFLADQLAHFAEVGVRPEIEVFNHTIVENSVTLYQSPLVKagVPVLFMLVAAVdqyhrd 389
                  66666666777778**************5.6779*********************************************6556666666665777888 PP

                  .........................CTS--S-HHHHH....HHHHHHHHHTTCEEEEEE-.....................GGGHHHHHHHHHHTT-E CS
        BKACE 177 .........................pggapatpenll....flkemadrlpegawsvagi.....................graqlplaaaalalGgh 224
                                           +g  +a+ ++++                      +                     g+ q  l+  a+al ++
  YP_111366.1 390 pvsgdtsddslidvptrkaiakllqAGTDDAHEKAVElaatQ-----------------LrptvdklrdnfpsckislllpGPFQALLVDVAIALDLD 470
                  744444444444444444444444222223333333333333.................1444444444444444455566999999*********97 PP

                  .EEESTTT-SEE......ETTEE-S-HHHHHHHHHHHHHHTT-EB--HHHHHHHCT CS
        BKACE 225 .vRvGlEDnlyl......kkgelaksNaelVeravriarelgreiatpaeaReilg 273
                   +RvGlED l +      +  ++a   +++V+ ++  +++ g  i +++ +R+ lg
  YP_111366.1 471 gIRVGLEDALNVfdarvpGGVRKACGTGDQVRWLRLELERRGIGIVDAEALRDELG 526
                  7*******998866666444567889999999999999999999999999999887 PP



Or compare YP_111366.1 to CDD or PaperBLAST