PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2205939 to PF05957 (DUF883)

VIMSS2205939 has 114 amino acids

Query:       DUF883  [M=53]
Accession:   PF05957.17
Description: DUF883 N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.4e-07   16.4   1.2      5e-07   15.9   0.5    1.6  1  VIMSS2205939  


Domain annotation for each sequence (and alignments):
>> VIMSS2205939  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   15.9   0.5     5e-07     5e-07       3      38 ..      24      59 ..      22      64 .. 0.93

  Alignments for each domain:
  == domain 1  score: 15.9 bits;  conditional E-value: 5e-07
        DUF883  3 liddlksLladleeLLksaadeageeadeLRerled 38
                  +++ +++L+++l+eL + +++ +  + +++R+++ +
  VIMSS2205939 24 IEEQIEALRNELAELTRLVGKSSRHQGEKIRSQAGA 59
                  57889****************************987 PP



Or compare VIMSS2205939 to CDD or PaperBLAST