PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS512343 to PF05957 (DUF883)

VIMSS512343 has 105 amino acids

Query:       DUF883  [M=94]
Accession:   PF05957.13
Description: Bacterial protein of unknown function (DUF883)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.6e-34  103.0   2.7    6.7e-34  102.7   2.7    1.1  1  VIMSS512343  


Domain annotation for each sequence (and alignments):
>> VIMSS512343  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  102.7   2.7   6.7e-34   6.7e-34       2      94 .]      13     105 .]      12     105 .] 0.98

  Alignments for each domain:
  == domain 1  score: 102.7 bits;  conditional E-value: 6.7e-34
       DUF883   2 eleaeleslladleellkeaadeageeaeelRerleerlerarerlrdaeeavaerakeaaeaaddyVrenPwqavGiAagvGlllGlLlarR 94 
                  +l + +++ l+d+e ll+eaa+++g++a elRer+ ++++r+re+l da++av er ++aa+a+ddyV++nPwqa++iA + GlllGlL++rR
  VIMSS512343  13 KLIDSVKTSLNDAETLLREAASTTGDKATELRERALASVRRTREALYDAQDAVLERGRRAARATDDYVHDNPWQAISIAGVTGLLLGLLISRR 105
                  78999***************************************************************************************9 PP



Or compare VIMSS512343 to CDD or PaperBLAST