PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001017717.1 to PF06155 (DUF971)

NP_001017717.1 has 325 amino acids

Query:       DUF971  [M=85]
Accession:   PF06155.12
Description: Protein of unknown function (DUF971)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-22   66.2   2.2    1.1e-18   54.0   0.2    2.4  2  NP_001017717.1  


Domain annotation for each sequence (and alignments):
>> NP_001017717.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   54.0   0.2   1.1e-18   1.1e-18       5      84 ..      58     137 ..      54     138 .. 0.89
   2 !   19.5   0.1   6.6e-08   6.6e-08       7      46 ..     117     157 ..     112     175 .. 0.82

  Alignments for each domain:
  == domain 1  score: 54.0 bits;  conditional E-value: 1.1e-18
          DUF971   5 kkgkrLeiewddgkesslpaelLRdacpcaecr.kp.gqrllqsgkipkdvkiesiepvgnyalrlvfsDghdsgiYsweyL 84 
                      +++ L+i wddg+ s +p+++LRd+c+c  c  ++ + r l  ++++ ++++ +++ ++   +++++ D+h+s  ++ ++L
  NP_001017717.1  58 DQERLLQIDWDDGSCSLYPFTWLRDNCRCPLCTlQSaQARSLLFSHLDVHTGMDHVQLMD-NKVSITWPDQHSSE-FDPDWL 137
                     5799*****************************74457778888888999*******888.78***********9.988888 PP

  == domain 2  score: 19.5 bits;  conditional E-value: 6.6e-08
          DUF971   7 gkrLeiewddgkesslpaelLRdacpcaecrkp.gqrllqs 46 
                     +++++i+w d+++s+++  +L++ c + e r+  +++l+ +
  NP_001017717.1 117 DNKVSITWPDQHSSEFDPDWLKKRCFSSEARQAlQEELFLN 157
                     6899**************************96566655444 PP



Or compare NP_001017717.1 to CDD or PaperBLAST