PaperBLAST – Find papers about a protein or its homologs

 

Align reanno::MR1:203247 to PF06155 (GBBH-like_N)

reanno::MR1:203247 has 128 amino acids

Query:       GBBH-like_N  [M=85]
Accession:   PF06155.16
Description: Gamma-butyrobetaine hydroxylase-like, N-terminal
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------           -----------
    7.2e-35  105.9   0.0    9.2e-35  105.6   0.0    1.1  1  reanno::MR1:203247  


Domain annotation for each sequence (and alignments):
>> reanno::MR1:203247  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  105.6   0.0   9.2e-35   9.2e-35       2      85 .]      12      93 ..      11      93 .. 0.98

  Alignments for each domain:
  == domain 1  score: 105.6 bits;  conditional E-value: 9.2e-35
         GBBH-like_N  2 rlkkdsrkLeiewddgktselpaewLRvacpcaecrgpgqrllqtgkieedvkikeiepvgnyavrivfsDghdsgiYsweyLr 85
                        +lk++sr Lei++d+g++++l++e+LRv++p+ae++g+g+ +l+t+k  ++v+i++iepvgnyav+ivf+Dghd+g++sw++L+
  reanno::MR1:203247 12 KLKRKSRILEISFDNGEQYQLTCEMLRVYSPSAEVHGHGNPKLVTHK--KNVNITRIEPVGNYAVKIVFDDGHDTGLFSWQVLY 93
                        799*********************************99*********..*********************************97 PP



Or compare reanno::MR1:203247 to CDD or PaperBLAST