PaperBLAST – Find papers about a protein or its homologs

 

Align XP_016869311.1 to PF06237 (SLC52_ribofla_tr)

XP_016869311.1 has 281 amino acids

Query:       SLC52_ribofla_tr  [M=429]
Accession:   PF06237.16
Description: Solute carrier family 52, riboflavin transporter
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    4.7e-86  275.4   8.9    3.6e-72  229.7   1.1    2.0  2  XP_016869311.1  


Domain annotation for each sequence (and alignments):
>> XP_016869311.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   50.6   1.6   8.4e-18   8.4e-18       3      37 ..      10      44 ..       8      56 .. 0.91
   2 !  229.7   1.1   3.6e-72   3.6e-72     234     429 .]      76     271 ..      44     271 .. 0.95

  Alignments for each domain:
  == domain 1  score: 50.6 bits;  conditional E-value: 8.4e-18
  SLC52_ribofla_tr  3 llvhlLvilFgigsWvainglwveLPllvkelPEg 37
                      +l+hlLv+lFg+gsW a+ng+wveLP++vkelPE 
    XP_016869311.1 10 VLTHLLVALFGMGSWAAVNGIWVELPVVVKELPEA 44
                      79********************************7 PP

  == domain 2  score: 229.7 bits;  conditional E-value: 3.6e-72
  SLC52_ribofla_tr 234 seeeeeeeepkkeskeevkkkepeeeeekkklskaqlvyllvllavvnaltngvlpSvqsYsclpYgnlaYhlavtlasianPlacflamflk 326
                       +eee ee++p +e  ++++ ++p  + ++ +l +a+ ++ll lla++naltngvlp+vqs+sclpYg+laYhlav+l+s anPlacflam + 
    XP_016869311.1  76 AEEEVEESSPLQEPPSQAAGTTPGPDPKAYQLLSARSACLLGLLAATNALTNGVLPAVQSFSCLPYGRLAYHLAVVLGSAANPLACFLAMGVL 168
                       467788899999999999999999999999*************************************************************** PP

  SLC52_ribofla_tr 327 vrslvllgvlsllgtlfgayilalAalspcpllvgstlGevlvvlswillvgllsYvkvvigvllreeghsaLvwvGaviqlGSliGalvmFp 419
                       +rsl+ lg lsllg+++g+y++alA+lspcp+lvg+++G+vlvvlsw+l++g++sYvkv+ ++ll+  g+ aL+ +G++iq+GSl+Ga++mFp
    XP_016869311.1 169 CRSLAGLGGLSLLGVFCGGYLMALAVLSPCPPLVGTSAGVVLVVLSWVLCLGVFSYVKVAASSLLHGGGRPALLAAGVAIQVGSLLGAVAMFP 261
                       ********************************************************************************************* PP

  SLC52_ribofla_tr 420 lvnvyklFks 429
                        +++y++F+s
    XP_016869311.1 262 PTSIYHVFHS 271
                       ********86 PP



Or compare XP_016869311.1 to CDD or PaperBLAST