PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS217005 to PF06295 (DUF1043)

VIMSS217005 has 145 amino acids

Query:       DUF1043  [M=123]
Accession:   PF06295.16
Description: Protein of unknown function (DUF1043)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.1e-25   75.3   0.0    2.9e-25   74.9   0.0    1.1  1  VIMSS217005  


Domain annotation for each sequence (and alignments):
>> VIMSS217005  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   74.9   0.0   2.9e-25   2.9e-25       4     117 ..      14     130 ..      12     133 .. 0.89

  Alignments for each domain:
  == domain 1  score: 74.9 bits;  conditional E-value: 2.9e-25
      DUF1043   4 glvvGliiGalvlrltnsklkkqkklekelekakaeleeyrqeledHFarsaelLeklakdyqkLyqhlaksseeLlp.eltekdnpvkkkleekkae 100
                  +lv+G+++G++v+rl+ ++    ++++++l++ +++++ y++e+++HF  +a l++kl+++yq++++hla+++++L+  + t++++  + +  + +  
  VIMSS217005  14 ALVIGVAVGFIVARLLPNA--APSNTQRQLDDIQKRFDSYQNEVVTHFNSTAMLVKKLTQSYQDVQDHLAEGANSLALdDVTRQRLLAALHSDAPQGP 109
                  79*************8877..8999***************************************************9978888888887766665544 PP

      DUF1043 101 kee....eeaeeqPrDYsega 117
                  +++    ++  e PrDY+++a
  VIMSS217005 110 RDRltppKDTAEVPRDYAPKA 130
                  444888899999******987 PP



Or compare VIMSS217005 to CDD or PaperBLAST