PaperBLAST – Find papers about a protein or its homologs

 

Align NP_417681.1 to PF06551 (DUF1120)

NP_417681.1 has 254 amino acids

Query:       DUF1120  [M=116]
Accession:   PF06551.12
Description: Protein of unknown function (DUF1120)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-51  159.9   2.5    2.7e-51  158.9   2.5    1.6  1  NP_417681.1  


Domain annotation for each sequence (and alignments):
>> NP_417681.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.9   2.5   2.7e-51   2.7e-51       1     116 []      33     146 ..      33     146 .. 0.99

  Alignments for each domain:
  == domain 1  score: 158.9 bits;  conditional E-value: 2.7e-51
      DUF1120   1 lkvtGeltagaCtPvlsgGGvvdyGtksvsaLspt....klnqlGtkditltitCeaatkiavtakDnradsivalkdssgiakvldiknallggsiv 94 
                  l+++Ge+t+gaCtPv++gGG+vdyG++++saL+pt    kl+qlG+k++tl+itC+a+t+iavt+kDnr+++ival+d+s+i+k++d+ ++      +
  NP_417681.1  33 LTIIGEYTPGACTPVVTGGGIVDYGKHHNSALNPTgksnKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDTLVD------M 124
                  79**********************************999****************************************************......* PP

      DUF1120  95 kqtkrafGlGktkdgkkiGays 116
                  k+tk+afGlG++++g+kiGa+s
  NP_417681.1 125 KGTKNAFGLGSAPNGQKIGAAS 146
                  ********************87 PP



Or compare NP_417681.1 to CDD or PaperBLAST