PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5784014 to PF06551 (DUF1120)

VIMSS5784014 has 228 amino acids

Query:       DUF1120  [M=116]
Accession:   PF06551.12
Description: Protein of unknown function (DUF1120)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      2e-10   27.1   1.0    3.1e-10   26.5   0.4    1.7  2  VIMSS5784014  


Domain annotation for each sequence (and alignments):
>> VIMSS5784014  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.5   0.4   3.1e-10   3.1e-10       1      92 [.      27     115 ..      27     148 .. 0.85
   2 ?   -2.0   0.0      0.21      0.21      91     114 ..     164     188 ..     130     190 .. 0.51

  Alignments for each domain:
  == domain 1  score: 26.5 bits;  conditional E-value: 3.1e-10
       DUF1120   1 lkvtGeltagaCtPvlsgGG.vvdyGtksvsaLsptklnqlGtkditltitCeaatkiavtakDnradsivalkdssgiakvldiknallggs 92 
                   lk+ G++t+ +Ct    +   ++dyG +s s + +++   lG k  +++i+C a+  +++ + D+ + s     ds +i +v+ + na+++++
  VIMSS5784014  27 LKINGDITPPTCTVNAGDNDiIIDYGVISPSFIPAEENYALGAKSANIKISCDASNYLTLKVSDTYKTS---STDSAKI-SVFGLVNAKNTEQ 115
                   799**********9988766268*****************************************99888...4555554.3445555555555 PP

  == domain 2  score: -2.0 bits;  conditional E-value: 0.21
       DUF1120  91 gsivkqtkrafGlGktkdg.kkiGa 114
                   + +v + + ++  Gk  +  ++iGa
  VIMSS5784014 164 QAQVDKNNLKLIAGKVFNAkIQIGA 188
                   2333333444444444443135555 PP



Or compare VIMSS5784014 to CDD or PaperBLAST