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Align NP_001116419.2 to PF06565 (DUF1126)

NP_001116419.2 has 648 amino acids

Query:       DUF1126  [M=105]
Accession:   PF06565.12
Description: DUF1126 PH-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
   1.1e-106  336.2   3.1    1.7e-39  120.2   0.1    3.4  3  NP_001116419.2  


Domain annotation for each sequence (and alignments):
>> NP_001116419.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.2   1.7e-36   1.7e-36       2     105 .]      87     190 ..      86     190 .. 0.96
   2 !  120.2   0.1   1.7e-39   1.7e-39       1     105 []     232     351 ..     232     351 .. 0.90
   3 !  104.5   0.0   1.3e-34   1.3e-34       3     104 ..     411     511 ..     409     512 .. 0.93

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 1.7e-36
         DUF1126   2 kkflendrkvLrFyalwddk.resleeeer..kfvisyyleDdtieikEprqrNsGikggkflkRqklpkpeeeakgeyytpkdlnvgatvnvfg 93 
                     ++++++d+kvL+F+a+++++ + s+ee++r  ++ i+yyleDd++++ Ep ++NsGi++gk++kRq+l k  ++  g++y++kdln g +++++g
  NP_001116419.2  87 PAHVAFDKKVLKFSAYFQEDvPISMEEHYRirRVNIYYYLEDDSMSVIEPVVENSGIPQGKLVKRQRLAK--ND-VGDHYHWKDLNRGINLTIYG 178
                     67899****************99999999999**************************************..44.79****************** PP

         DUF1126  94 rkfllldcdeft 105
                     ++f+++dcd ft
  NP_001116419.2 179 KTFRIVDCDRFT 190
                     **********98 PP

  == domain 2  score: 120.2 bits;  conditional E-value: 1.7e-39
         DUF1126   1 lkkflendrkvLrFyalwddkresleeeerkfvisyyleDdtieikEprqrNsG..ikggkflkRqklpk...peeea.............kgey 77 
                     lk+fl++d++vLrFya+wdd ++sl++e r+++i+yyl Ddt+ei+E+++rN+G  + ++ +++Rq++pk     + +               e+
  NP_001116419.2 232 LKQFLTFDKQVLRFYAIWDD-TDSLFGECRHYIIHYYLMDDTVEIREVHERNNGrdP-FPLLMNRQRMPKvlvD-NGKnfpqcvleisdqeVLEW 323
                     589*****************.7*********************************55.9***********7742.2226789999988655555* PP

         DUF1126  78 ytpkdlnvgatvnvfgrkfllldcdeft 105
                     yt+kd+ vg+ ++++gr+f+++dcd ft
  NP_001116419.2 324 YTAKDFIVGKPLTILGRTFFIYDCDPFT 351
                     **************************98 PP

  == domain 3  score: 104.5 bits;  conditional E-value: 1.3e-34
         DUF1126   3 kflendrkvLrFyalwddkresleeeerkfvisyyleDdtieikEprqrNsGikggkflkRqklpkpeeea.kgeyytpkdlnvgatvnvfgrkf 96 
                     k+l nd+kvLr+ a ++++   +e+++r+fv+sy+l+ d i+i+Ep++rNsGi ggkfl R+k+ k+ ++  ++ yy p+d+ +ga+++vfg++f
  NP_001116419.2 411 KMLMNDNKVLRYLAALESP--IPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKFLGRTKVVKSFSPVdNPIYYGPSDFFIGAVIEVFGHRF 503
                     7899**************8..9******************************99************444434677******************** PP

         DUF1126  97 llldcdef 104
                     ++ld de+
  NP_001116419.2 504 VILDTDEY 511
                     *******8 PP



Or compare NP_001116419.2 to CDD or PaperBLAST