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Align NP_060570.2 to PF06565 (DUF1126)

NP_060570.2 has 640 amino acids

Query:       DUF1126  [M=105]
Accession:   PF06565.12
Description: DUF1126 PH-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.5e-107  336.4   5.3    2.3e-40  123.0   0.2    3.4  3  NP_060570.2  


Domain annotation for each sequence (and alignments):
>> NP_060570.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  110.5   0.3   1.8e-36   1.8e-36       2     105 .]      87     190 ..      86     190 .. 0.95
   2 !  123.0   0.2   2.3e-40   2.3e-40       1     105 []     232     351 ..     232     351 .. 0.91
   3 !  104.1   0.0   1.8e-34   1.8e-34       3     104 ..     411     511 ..     409     512 .. 0.95

  Alignments for each domain:
  == domain 1  score: 110.5 bits;  conditional E-value: 1.8e-36
      DUF1126   2 kkflendrkvLrFyalwddk.resleeeer..kfvisyyleDdtieikEprqrNsGikggkflkRqklpkpeeeakgeyytpkdlnvgatvnvfgrkf 96 
                  ++++++d+kvL+F+a+++++ + s ee++r  ++ i+yyleDd++++ Ep ++NsGi +gk++kRq+l k  ++ +g++y++kdln g +++++g++f
  NP_060570.2  87 PAHVAFDKKVLKFDAYFQEDvPMSTEEQYRirQVNIYYYLEDDSMSVIEPVVENSGILQGKLIKRQRLAK--ND-RGDHYHWKDLNRGINITIYGKTF 181
                  67899****************89999999999************************99************..44.79********************* PP

      DUF1126  97 llldcdeft 105
                  +++dcd+ft
  NP_060570.2 182 RVVDCDQFT 190
                  ********8 PP

  == domain 2  score: 123.0 bits;  conditional E-value: 2.3e-40
      DUF1126   1 lkkflendrkvLrFyalwddkresleeeerkfvisyyleDdtieikEprqrNsG..ikggkflkRqklpk...peeea.............kgeyytp 80 
                  lk+fl++d++vLrFya+wdd ++s+++e r+++i+yyl Ddt+ei+E+++rN+G  + ++ +++Rq++pk   ++  +               e+yt+
  NP_060570.2 232 LKQFLTFDKQVLRFYAIWDD-TDSMYGECRTYIIHYYLMDDTVEIREVHERNDGrdP-FPLLMNRQRVPKvlvENA-KnfpqcvleisdqeVLEWYTA 326
                  589*****************.7*********************************55.9***********874332.26899999988655555**** PP

      DUF1126  81 kdlnvgatvnvfgrkfllldcdeft 105
                  kd+ vg++++++gr+f+++dcd ft
  NP_060570.2 327 KDFIVGKSLTILGRTFFIYDCDPFT 351
                  ***********************98 PP

  == domain 3  score: 104.1 bits;  conditional E-value: 1.8e-34
      DUF1126   3 kflendrkvLrFyalwddkresleeeerkfvisyyleDdtieikEprqrNsGikggkflkRqklpkpeeea.kgeyytpkdlnvgatvnvfgrkflll 99 
                  k+l nd+kvLr+ a+++++   +e+++r+fv+sy+l+ d i+i+Ep++rNsGi ggk+l R+k+ kp ++  ++ yy p+d+ +ga+++vfg++f +l
  NP_060570.2 411 KMLVNDNKVLRYLAVLESP--IPEDKDRRFVFSYFLATDMISIFEPPVRNSGIIGGKYLGRTKVVKPYSTVdNPVYYGPSDFFIGAVIEVFGHRFIIL 506
                  7899**************8..9******************************99************776666888*********************** PP

      DUF1126 100 dcdef 104
                  d de+
  NP_060570.2 507 DTDEY 511
                  ****8 PP



Or compare NP_060570.2 to CDD or PaperBLAST