PaperBLAST – Find papers about a protein or its homologs

 

Align Q5JST6 to PF06565 (DM10_dom)

Q5JST6 has 749 amino acids

Query:       DM10_dom  [M=105]
Accession:   PF06565.16
Description: DM10 domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
   1.1e-101  320.1   3.9    3.1e-36  109.7   0.2    4.3  4  Q5JST6    


Domain annotation for each sequence (and alignments):
>> Q5JST6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  103.9   0.4     2e-34     2e-34       2     105 .]      69     174 ..      68     174 .. 0.92
   2 !   79.1   0.0   1.1e-26   1.1e-26       1      93 [.     219     308 ..     219     318 .. 0.92
   3 !   25.8   0.0     4e-10     4e-10      58     105 .]     317     360 ..     311     360 .. 0.87
   4 !  109.7   0.2   3.1e-36   3.1e-36       1     105 []     419     530 ..     419     530 .. 0.95

  Alignments for each domain:
  == domain 1  score: 103.9 bits;  conditional E-value: 2e-34
  DM10_dom   2 kkflendrkvLrFkayldek.sespeeeer..kfvisyyleDdtieifEpkqrNsGivggkflkRqklpkpgseekeeyytpkdlnvgatvnvfgrkflll 99 
               ++++++d++vL+F+ayl+e+  ++++ ++r  +++i++y eDdti+++Ep+++NsG+ +g+ ++R+++  p ++e +++yt+ ++nvg++v ++gr+f ++
    Q5JST6  69 PSWVAFDKQVLSFDAYLEEEvLDKSQTNYRirYYKIYFYPEDDTIQVNEPEVKNSGLLQGTSIRRHRITLPPPDE-DQFYTVYHFNVGTEVVFYGRTFKIY 168
               78*******************67777777777************************99***********976653.49*********************** PP

  DM10_dom 100 dadeft 105
               d+d+ft
    Q5JST6 169 DCDAFT 174
               *****9 PP

  == domain 2  score: 79.1 bits;  conditional E-value: 1.1e-26
  DM10_dom   1 lkkflendrkvLrFkayldeksespeeeerkfvisyyleDdtieifEpkqrNsG.ivggkflkRqklpkpgseekeeyytpkdlnvgatvnvfg 93 
               lk+fl++++k+L+F++++d+ s s+++++r+++++y+l+Ddtiei+E  ++ sG  +  +fl+R+klpk  + + +++y+p +++ +a++n +g
    Q5JST6 219 LKQFLQYHGKILCFFCLWDD-SVSMFGDRRELILHYFLCDDTIEIKELLPHSSGrDALKMFLRRSKLPK--NCP-PRVYQPGQITDRAVLNSYG 308
               68******************.69*******************************9779***********..322.38**************998 PP

  == domain 3  score: 25.8 bits;  conditional E-value: 4e-10
  DM10_dom  58 gkflkRqklpkpgseekeeyytpkdlnvgatvnvfgrkfllldadeft 105
               g ++ R kl k +  +  e+y+ +dl +g t+nv grk+ll+d+deft
    Q5JST6 317 GYLFDRYKLGKVD--Q--EFYKDSDLSLGVTINVWGRKVLLYDCDEFT 360
               6778888888833..3..9****************************9 PP

  == domain 4  score: 109.7 bits;  conditional E-value: 3.1e-36
  DM10_dom   1 lkkflendrk.....vLrFkayldeksespeeeerkfvisyyleDdtieifEpkqrNsGivggkflkRqklpkpgse.eke...eyytpkdlnvgatvnvf 92 
               +kkf+e+d+      +LrF+a+l ++  ++ + +r fvisyyl Ddti++fEp +rNsGi+gg+flkR++++kpg+e  k+   ey+++++l++g tvnv+
    Q5JST6 419 FKKFMEKDSYgsksnILRFFAKLVTD--KCVDLDRMFVISYYLGDDTISVFEPIERNSGIAGGMFLKRSRVKKPGQEvFKSelsEYIKAEELYIGVTVNVN 517
               689999998888888**********7..***********************************************9987779999**************** PP

  DM10_dom  93 grkfllldadeft 105
               g+ f+ll+ade+t
    Q5JST6 518 GYLFRLLNADEYT 530
               ************9 PP



Or compare Q5JST6 to CDD or PaperBLAST