PaperBLAST – Find papers about a protein or its homologs

 

Align CAZy::AAS20331.1 to PF06722 (DUF1205)

CAZy::AAS20331.1 has 389 amino acids

Query:       DUF1205  [M=95]
Accession:   PF06722.12
Description: Protein of unknown function (DUF1205)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
      1e-13   37.5   0.0    4.3e-13   35.5   0.0    2.0  2  CAZy::AAS20331.1  


Domain annotation for each sequence (and alignments):
>> CAZy::AAS20331.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   35.5   0.0   4.3e-13   4.3e-13       2      95 .]     176     273 ..     175     273 .. 0.89
   2 ?   -1.3   0.0      0.13      0.13      48      91 ..     331     374 ..     326     378 .. 0.57

  Alignments for each domain:
  == domain 1  score: 35.5 bits;  conditional E-value: 4.3e-13
                       E-S-GGGS------EEE-------SS----GGGSS-....-SS-EEEEE-------------STTTTHHHHHTS.SSEEEE---TTTTSS-SS CS
           DUF1205   2 dvaPpslrlddgketvsmryvpyNgasvveeWlkkk....sarkRvcvtlGtskaedladadlleavldqvael.DaEivvaldeearselre 89 
                       d++Ppsl+l  ++ +    +    +   ++eWl+++      ++Rv+v+lG  +    ++ +l++++ld ++ l D E++++++ee r+ l+ 
  CAZy::AAS20331.1 176 DPCPPSLQLPGLTGAPRGATCRSTADGQLPEWLREDhrdrGTGRRVAVSLGGRTLA-FNGVPLMRNILDGLGGLpDTEVIATVEEEYREALGR 267
                       99*******9999998899999999999*****87642235679*******98888.999************998****************** PP

                       --SSEE CS
           DUF1205  90 lpdnvR 95 
                       +p+nvR
  CAZy::AAS20331.1 268 VPGNVR 273
                       *****9 PP

  == domain 2  score: -1.3 bits;  conditional E-value: 0.13
                       ------------STTTTHHHHHT.SSSEEEE---TTTTSS-SS-- CS
           DUF1205  48 Gtskaedladadlleavldqvae.lDaEivvaldeearselrelp 91 
                       G++ +  +a++d  ++v ++va+ lD    ++  e+ r e++++p
  CAZy::AAS20331.1 331 GITIED-AAQQDDTARVRAAVAAlLDEPAYAKAAEQLRAEMAAMP 374
                       444444.55566666666666651455555666666666666665 PP



Or compare CAZy::AAS20331.1 to CDD or PaperBLAST