PaperBLAST – Find papers about a protein or its homologs

 

Align CAZy::BAD08357.1 to PF06722 (EryCIII-like_C)

CAZy::BAD08357.1 has 419 amino acids

Query:       EryCIII-like_C  [M=145]
Accession:   PF06722.16
Description: Erythromycin biosynthesis protein CIII-like, C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence         Description
    ------- ------ -----    ------- ------ -----   ---- --  --------         -----------
    8.1e-47  144.9   0.7    4.4e-46  142.5   0.1    2.1  2  CAZy::BAD08357.1  


Domain annotation for each sequence (and alignments):
>> CAZy::BAD08357.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?    0.4   0.0      0.03      0.03      37      86 ..      16      66 ..       9     113 .. 0.73
   2 !  142.5   0.1   4.4e-46   4.4e-46       4     143 ..     270     410 ..     267     412 .. 0.98

  Alignments for each domain:
  == domain 1  score: 0.4 bits;  conditional E-value: 0.03
    EryCIII-like_C 37 dfvPlgvllptcaaivHhgGag.stltalsfGvPqvvlpdeadaavrarrv 86
                      ++vPl   l t+   vH +    ++ +    G+  v +++  + ++ a+ +
  CAZy::BAD08357.1 16 NMVPLAWALTTAGHEVHIASHPdNVQAISDSGLTAVPVGNDLNIMALAQST 66
                      678999999999999998765504444455788888888888888888876 PP

  == domain 2  score: 142.5 bits;  conditional E-value: 4.4e-46
    EryCIII-like_C   4 ldqvaelDaEivvaldedarpdlrelpdnvRlvdfvPlgvllptcaaivHhgGagstltalsfGvPqvvlpde.adaavrarrvaelGagivl 95 
                       +++va++Da++v+++++++  ++++lpdnvR vdfvPl++llp+caaivHhgG+g+ + a+ +GvPq+++p+  +d+   a+r ae+Ga++v 
  CAZy::BAD08357.1 270 VNAVADIDADVVATFSAEQVAEIGDLPDNVRAVDFVPLHALLPSCAAIVHHGGGGTRTNAIRYGVPQLIVPNWlWDEGYVAERFAERGAALVT 362
                       789*********************************************************************99******************* PP

    EryCIII-like_C  96 skdeltsdsiakavaevvedpayraaaaklaeeiaaePsPtEvakkle 143
                       ++++lt+d++++ + +++++p+++aaa+++++e  a Ps tE + +l+
  CAZy::BAD08357.1 363 EVPDLTPDRLRDQLRRLIAEPSFKAAAEQIQKEYDALPSLTETVGELV 410
                       *******************************************99987 PP



Or compare CAZy::BAD08357.1 to CDD or PaperBLAST