PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS150081 to PF06722 (DUF1205)

VIMSS150081 has 371 amino acids

Query:       DUF1205  [M=95]
Accession:   PF06722.12
Description: Protein of unknown function (DUF1205)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-41  126.7   0.1    2.8e-41  125.9   0.1    1.4  1  VIMSS150081  


Domain annotation for each sequence (and alignments):
>> VIMSS150081  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  125.9   0.1   2.8e-41   2.8e-41       1      95 []     165     260 ..     165     260 .. 0.99

  Alignments for each domain:
  == domain 1  score: 125.9 bits;  conditional E-value: 2.8e-41
                  EE-S-GGGS-..-----EEE-------SS----GGGSS--SS-EEEEE-------------STTTTHHHHHTSSSEEEE---TTTTSS-SS--SSEE CS
      DUF1205   1 idvaPpslrl..ddgketvsmryvpyNgasvveeWlkkksarkRvcvtlGtskaedladadlleavldqvaelDaEivvaldeearselrelpdnvR 95 
                  idv+Pps+++  +dg++++sm+yvpyNg++v+eeW++++++rkR++v+lGt+k++ +++ dl+++v+d+++e+DaEi+++l+++ars+lr+lp+nvR
  VIMSS150081 165 IDVTPPSMSIlqNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKPM-VDGLDLISWVMDSAGEVDAEIILHLPANARSDLRSLPPNVR 260
                  8********999*******************************************.999*************************************9 PP



Or compare VIMSS150081 to CDD or PaperBLAST