PaperBLAST – Find papers about a protein or its homologs

 

Align NP_001326215.1 to PF07039 (SGF29_Tudor)

NP_001326215.1 has 251 amino acids

Query:       SGF29_Tudor  [M=132]
Accession:   PF07039.15
Description: SGF29 tudor-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.1e-29   89.4   0.0    2.2e-29   88.4   0.0    1.5  1  NP_001326215.1  


Domain annotation for each sequence (and alignments):
>> NP_001326215.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   88.4   0.0   2.2e-29   2.2e-29       1     102 [.     131     232 ..     131     245 .. 0.90

  Alignments for each domain:
  == domain 1  score: 88.4 bits;  conditional E-value: 2.2e-29
     SGF29_Tudor   1 kgeeVaakekkkekeeeeewilaeVvkgegkknrYeveDadpdee..ekekkryklsakeiiplpkekakpetlaefpkgkkVLAlYPeTTtFYk 93 
                     kge+Vaa+ ++ e++e++ew++++V+++++++++ ev D++p ++  + ++++ykls++ i+p+pk+++ + +++ef +gk+VLA+YP TT++Yk
  NP_001326215.1 131 KGEQVAARVTA-EDAEKDEWFVVKVIHFDRETKEVEVLDEEPGDDeeGGGQRTYKLSMSCILPFPKRNDPS-STQEFIPGKHVLAVYPGTTALYK 223
                     699****7666.7999*************************877766888999*************99975.566******************** PP

     SGF29_Tudor  94 AeVvsspkk 102
                     A+V+s+p+k
  NP_001326215.1 224 ATVISTPRK 232
                     *****9965 PP



Or compare NP_001326215.1 to CDD or PaperBLAST