PaperBLAST – Find papers about a protein or its homologs

 

Align XP_006230294.1 to PF07039 (DUF1325)

XP_006230294.1 has 293 amino acids

Query:       DUF1325  [M=132]
Accession:   PF07039.11
Description: SGF29 tudor-like domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-44  137.4   0.9    1.9e-44  137.1   0.1    1.5  2  XP_006230294.1  


Domain annotation for each sequence (and alignments):
>> XP_006230294.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.5   0.1      0.57      0.57      51      69 ..      28      46 ..      19      56 .. 0.57
   2 !  137.1   0.1   1.9e-44   1.9e-44       1     131 [.     158     287 ..     158     288 .. 0.93

  Alignments for each domain:
  == domain 1  score: -3.5 bits;  conditional E-value: 0.57
         DUF1325 51 yklsaksiiplpkskakpe 69
                     + s ++++ + k+++  +
  XP_006230294.1 28 RSRSEHNLVNIQKTHERMQ 46
                    4445556666665555444 PP

  == domain 2  score: 137.1 bits;  conditional E-value: 1.9e-44
         DUF1325   1 kgeeVaakekkkekeeeeewilaeVvkiegkknrYeveDadpdeekekkkyklsaksiiplpkskakpesk.laefpkgkkVLAlYPeTTtFYkA 94 
                     +g++Vaa+ k    e +e+wilaeVv++++ +n+Yev+D+d   e++k++++ls+++iiplp++ka+pe++ +a f+k++ VLAlYP+TT+FY+A
  XP_006230294.1 158 PGDKVAARVKA--VEGDEQWILAEVVSYSHATNKYEVDDID---EEGKERHTLSRRRIIPLPQWKANPETDpEALFQKEQLVLALYPQTTCFYRA 247
                     599****5555..7899************************...4555689*******************99*********************** PP

         DUF1325  95 eVvaspkkkekeyklkFeddeeedk...ereVerrlVvel 131
                      ++ +p++ +++y++ Fed +++d+     +V++r+Vv++
  XP_006230294.1 248 LIHTPPQRPQDDYSVLFEDTSYADGyspPLNVAQRYVVAC 287
                     *************************999556*******98 PP



Or compare XP_006230294.1 to CDD or PaperBLAST