PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS179167 to PF07043 (DUF1328)

VIMSS179167 has 50 amino acids

Query:       DUF1328  [M=39]
Accession:   PF07043.13
Description: Protein of unknown function (DUF1328)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.5e-18   53.1  21.5    1.5e-18   53.1  21.5    1.6  2  VIMSS179167  


Domain annotation for each sequence (and alignments):
>> VIMSS179167  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   53.1  21.5   1.5e-18   1.5e-18       1      39 []       2      40 ..       2      40 .. 0.98
   2 !    4.2   0.7    0.0029    0.0029       3      12 ..      37      46 ..      36      47 .. 0.84

  Alignments for each domain:
  == domain 1  score: 53.1 bits;  conditional E-value: 1.5e-18
      DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                 l+FLv+Al+Ag+LGFgGiaga+agiA+iLFf Fl+l+vi
  VIMSS179167  2 LVFLVVALVAGALGFGGIAGASAGIAQILFFFFLALLVI 40
                 79************************************8 PP

  == domain 2  score: 4.2 bits;  conditional E-value: 0.0029
      DUF1328  3 FLviAliAgv 12
                  Lvi+liA +
  VIMSS179167 37 LLVISLIASA 46
                 59******75 PP



Or compare VIMSS179167 to CDD or PaperBLAST