PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS367827 to PF07043 (DUF1328)

VIMSS367827 has 55 amino acids

Query:       DUF1328  [M=39]
Accession:   PF07043.13
Description: Protein of unknown function (DUF1328)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      6e-15   41.6  19.5    7.3e-15   41.3  19.5    1.1  1  VIMSS367827  


Domain annotation for each sequence (and alignments):
>> VIMSS367827  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   41.3  19.5   7.3e-15   7.3e-15       1      39 []       6      44 ..       6      44 .. 0.98

  Alignments for each domain:
  == domain 1  score: 41.3 bits;  conditional E-value: 7.3e-15
      DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                 l+F++iA+ Ag+LGF Giag+ a+ Ak+LFf +l+l v+
  VIMSS367827  6 LVFFLIAVLAGILGFAGIAGTLAWAAKVLFFAGLILTVV 44
                 79***********************************98 PP



Or compare VIMSS367827 to CDD or PaperBLAST