PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5215257 to PF07043 (DUF1328)

VIMSS5215257 has 52 amino acids

Query:       DUF1328  [M=39]
Accession:   PF07043.13
Description: Protein of unknown function (DUF1328)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.5e-14   40.3  19.5      2e-14   39.9  19.5    1.2  1  VIMSS5215257  


Domain annotation for each sequence (and alignments):
>> VIMSS5215257  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   39.9  19.5     2e-14     2e-14       1      39 []       6      44 ..       6      44 .. 0.99

  Alignments for each domain:
  == domain 1  score: 39.9 bits;  conditional E-value: 2e-14
       DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfvi 39
                  +iF+viAliA +LGFgG+ag + ++A iL++i+++l+vi
  VIMSS5215257  6 IIFAVIALIASLLGFGGVAGLSKDFAVILLVIAVILAVI 44
                  8*************************************8 PP



Or compare VIMSS5215257 to CDD or PaperBLAST