PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS870730 to PF07043 (DUF1328)

VIMSS870730 has 54 amino acids

Query:       DUF1328  [M=39]
Accession:   PF07043.13
Description: Protein of unknown function (DUF1328)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.5e-21   61.2  21.0      6e-21   60.8  21.0    1.2  1  VIMSS870730  


Domain annotation for each sequence (and alignments):
>> VIMSS870730  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   60.8  21.0     6e-21     6e-21       1      38 [.       6      43 ..       6      44 .. 0.98

  Alignments for each domain:
  == domain 1  score: 60.8 bits;  conditional E-value: 6e-21
      DUF1328  1 liFLviAliAgvLGFgGiagaaagiAkiLFfiFlvlfv 38
                 ++FL+iA++A+vLGFgGiag+a+giAkiLF++Flv+f+
  VIMSS870730  6 ITFLIIAIVAAVLGFGGIAGTATGIAKILFVVFLVMFI 43
                 89***********************************8 PP



Or compare VIMSS870730 to CDD or PaperBLAST