PaperBLAST – Find papers about a protein or its homologs

 

Align NP_060844.2 to PF07092 (TMEM106)

NP_060844.2 has 274 amino acids

Query:       TMEM106  [M=141]
Accession:   PF07092.16
Description: TM106 protein C-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-71  224.1  12.2    3.9e-71  223.7  12.2    1.1  1  NP_060844.2  


Domain annotation for each sequence (and alignments):
>> NP_060844.2  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  223.7  12.2   3.9e-71   3.9e-71       1     141 []     118     258 ..     118     258 .. 1.00

  Alignments for each domain:
  == domain 1  score: 223.7 bits;  conditional E-value: 3.9e-71
      TMEM106   1 PrsiavedvGlksskvafdkeeklviLnitnvLnisnsnyysvtvtqltaqvqylktvvGkvklsnvlligPldskqvdytvaseiadelsylykiCt 98 
                  Prsi+v+++G+ks++v++d+++++++Lnitn+Lni+n+nyysv+v+++taqvq++ktv+Gk++l+n++ igPld+kq+dytv++ ia+e+sy+y++Ct
  NP_060844.2 118 PRSIDVKYIGVKSAYVSYDVQKRTIYLNITNTLNITNNNYYSVEVENITAQVQFSKTVIGKARLNNITIIGPLDMKQIDYTVPTVIAEEMSYMYDFCT 215
                  9************************************************************************************************* PP

      TMEM106  99 llkikvhnivlfiqvtvtlsylghseqlslesyeyvDCrantt 141
                  l++ikvhnivl++qvtvt++y+ghseq+s+e+y+yvDC++ntt
  NP_060844.2 216 LISIKVHNIVLMMQVTVTTTYFGHSEQISQERYQYVDCGRNTT 258
                  *****************************************97 PP



Or compare NP_060844.2 to CDD or PaperBLAST