PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS147742 to PF07338 (DUF1471)

VIMSS147742 has 91 amino acids

Query:       DUF1471  [M=56]
Accession:   PF07338.13
Description: Protein of unknown function (DUF1471)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.7e-20   56.8   0.1    2.7e-19   55.2   0.1    1.7  2  VIMSS147742  


Domain annotation for each sequence (and alignments):
>> VIMSS147742  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -0.9   0.0     0.094     0.094      31      40 ..      10      19 ..       9      28 .. 0.81
   2 !   55.2   0.1   2.7e-19   2.7e-19       1      56 []      37      89 ..      37      89 .. 0.98

  Alignments for each domain:
  == domain 1  score: -0.9 bits;  conditional E-value: 0.094
                 T-SEEEECCE CS
      DUF1471 31 GAkyYrItsa 40
                 GA ++++t +
  VIMSS147742 10 GALAFVVTNV 19
                 8999999976 PP

  == domain 2  score: 55.2 bits;  conditional E-value: 2.7e-19
                 EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTTEEEEEEEEE CS
      DUF1471  1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsarennggnlhatAelYK 56
                 +++igtis++ +  sp d++++l kkAdekGA+  + ts ++  ++++h+tA++YK
  VIMSS147742 37 YTKIGTISTT-GEMSPLDAREDLIKKADEKGADVVVLTSGQT--ENKIHGTADIYK 89
                 589*******.*******************************..***********9 PP



Or compare VIMSS147742 to CDD or PaperBLAST