PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2057132 to PF07338 (DUF1471)

VIMSS2057132 has 109 amino acids

Query:       DUF1471  [M=56]
Accession:   PF07338.13
Description: Protein of unknown function (DUF1471)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.2e-18   53.2   0.3    1.6e-18   52.8   0.3    1.2  1  VIMSS2057132  


Domain annotation for each sequence (and alignments):
>> VIMSS2057132  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   52.8   0.3   1.6e-18   1.6e-18       1      56 []      53     108 ..      53     108 .. 0.99

  Alignments for each domain:
  == domain 1  score: 52.8 bits;  conditional E-value: 1.6e-18
                   EEEEEEEEECSS-SSHHHHHHHHHHHHHHCT-SEEEECCECC...CTTEEEEEEEEE CS
       DUF1471   1 lqpigtisvsgvfgspsdledalskkAdekGAkyYrItsare.nnggnlhatAelYK 56 
                   lq+ig++s+  v+gsp+d+ +++ +kA ++ A+yY++++++e    g+++ +A+lY+
  VIMSS2057132  53 LQRIGSVSTM-VRGSPDDALAEIRAKAVAAKADYYVVVMVDEtIVTGQWYSQAILYR 108
                   89********.*********************************************8 PP



Or compare VIMSS2057132 to CDD or PaperBLAST