PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5735724 to PF07338 (DUF1471)

VIMSS5735724 has 90 amino acids

Query:       DUF1471  [M=56]
Accession:   PF07338.13
Description: Protein of unknown function (DUF1471)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    1.1e-24   72.5   0.3    1.6e-24   72.0   0.0    1.4  2  VIMSS5735724  


Domain annotation for each sequence (and alignments):
>> VIMSS5735724  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -3.7   0.4      0.71      0.71      24      33 ..       9      18 ..       7      21 .. 0.60
   2 !   72.0   0.0   1.6e-24   1.6e-24       1      56 []      33      90 .]      33      90 .] 0.95

  Alignments for each domain:
  == domain 1  score: -3.7 bits;  conditional E-value: 0.71
                  HHHHHHCT-S CS
       DUF1471 24 skkAdekGAk 33
                  +  A + GA+
  VIMSS5735724  9 ALSAVAFGAS 18
                  5556666665 PP

  == domain 2  score: 72.0 bits;  conditional E-value: 1.6e-24
                  EEEEEEEEEC...SS-SSHHHHHHHHHHHHHHCT-SEEEECCECC..CTT.EEEEEEEEE CS
       DUF1471  1 lqpigtisvs...gvfgspsdledalskkAdekGAkyYrItsarennggn.lhatAelYK 56
                  l+++g isv    g+f+spsdl+d+lsk AdekG+kyY+It+are  +g+ ++atAe+YK
  VIMSS5735724 33 LTKVGPISVGpsgGEFSSPSDLHDQLSKLADEKGGKYYVITAARE--HGPnFEATAEVYK 90
                  79*******************************************..5555********9 PP



Or compare VIMSS5735724 to CDD or PaperBLAST