PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS18932 to PF07510 (DUF1524)

VIMSS18932 has 658 amino acids

Query:       DUF1524  [M=139]
Accession:   PF07510.11
Description: Protein of unknown function (DUF1524)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    9.9e-33   99.2   5.2    9.9e-33   99.2   5.2    2.3  2  VIMSS18932  


Domain annotation for each sequence (and alignments):
>> VIMSS18932  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   99.2   5.2   9.9e-33   9.9e-33       1     139 []     359     493 ..     359     493 .. 0.92
   2 ?   -3.6   0.7      0.51      0.51      60      75 ..     517     531 ..     510     549 .. 0.49

  Alignments for each domain:
  == domain 1  score: 99.2 bits;  conditional E-value: 9.9e-33
     DUF1524   1 fprdeefrrallnaklysssrkklryilakelesalreedeeegeakkltiEHilPqslaekw.egagqedeekreelvndlgNLtlltkslNsslsnk 98 
                 fp+++ef++ +++ ++y+ +++k  y+l+ +le ++++++  ++  +k +iEHi+Pq+l+ +w ++ g+  +  +e++++++gNLtl+   +Ns++sn+
  VIMSS18932 359 FPNNDEFKKLFITIDFYKFKKNK--YFLE-RLE-NFDTKEPVDT--QKCNIEHIMPQTLTPEWqRDLGENFQAIHEKYLHTIGNLTLTG--YNSKYSNN 449
                 699****************9877..****.***.5554444444..4677***********998899999*******************..******** PP

     DUF1524  99 pfleKrd...lykksslrlnrklaekdewdeeaiearqeaLakv 139
                 +f+eKrd   ++k+ssl+ln+ l++ ++++e++ie+r+ +La++
  VIMSS18932 450 SFQEKRDmekGFKQSSLKLNQSLKDLESFGEKEIEKRASDLADW 493
                 *******9999******************************975 PP

  == domain 2  score: -3.6 bits;  conditional E-value: 0.51
     DUF1524  60 aekwegagqedeekre 75 
                 ++++ ++++e + k+e
  VIMSS18932 517 KKEK-KEKEEYKLKKE 531
                 2222.22222222222 PP



Or compare VIMSS18932 to CDD or PaperBLAST