PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS10109193 to PF07786 (DUF1624)

VIMSS10109193 has 440 amino acids

Query:       DUF1624  [M=223]
Accession:   PF07786.12
Description: Protein of unknown function (DUF1624)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence      Description
    ------- ------ -----    ------- ------ -----   ---- --  --------      -----------
    7.2e-11   28.2   6.7    7.2e-11   28.2   6.7    2.6  2  VIMSS10109193  


Domain annotation for each sequence (and alignments):
>> VIMSS10109193  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.2   6.7   7.2e-11   7.2e-11       1     118 [.      45     169 ..      45     208 .. 0.82
   2 ?    0.8   0.1     0.017     0.017     201     220 ..     391     410 ..     375     413 .. 0.84

  Alignments for each domain:
  == domain 1  score: 28.2 bits;  conditional E-value: 7.2e-11
        DUF1624   1 RieeiDalRGiAlilMiifHflfdLeffgylavslatsgl.wvvfarliaslFlfiaGvslvlahskslrw....rkflkRglkilaaallitaat 91 
                    R+ ++D++RG++++ Mi++      +++g + +s+++s++  v++a +++  Flfi+Gvsl++a+++   +    rk+l R lk+l+++l ++ + 
  VIMSS10109193  45 RLVSLDVFRGLTVAFMILV------DDVGGILPSINHSPWdGVTLADFVMPFFLFIVGVSLAFAYKNLSCRfvatRKALIRSLKLLLLGLFLQGGF 134
                    8899**********99986......68888888888665524677889****************88765557888****************99998 PP

        DUF1624  92 y.......lllpdsfi.vFGiLhlialalllallf 118
                    +       + ++ + i   GiL+ ia+a l++ l 
  VIMSS10109193 135 IhglnnltYGIDVEKIrLMGILQRIAIAYLVVALC 169
                    87777754445555666899*********999876 PP

  == domain 2  score: 0.8 bits;  conditional E-value: 0.017
        DUF1624 201 aklvrplallGrhsLliYli 220
                    +++  +l ++G h+L+iY++
  VIMSS10109193 391 KRASLVLEWMGIHALPIYVL 410
                    55677899**********86 PP



Or compare VIMSS10109193 to CDD or PaperBLAST