PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS2199720 to PF07786 (HGSNAT_cat)

VIMSS2199720 has 384 amino acids

Query:       HGSNAT_cat  [M=222]
Accession:   PF07786.16
Description: Heparan-alpha-glucosaminide N-acetyltransferase, catalytic
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    2.6e-20   59.0   8.3    2.6e-20   59.0   8.3    2.0  2  VIMSS2199720  


Domain annotation for each sequence (and alignments):
>> VIMSS2199720  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   59.0   8.3   2.6e-20   2.6e-20       1     187 [.      10     218 ..      10     231 .. 0.76
   2 ?   -0.9   0.3     0.055     0.055     205     220 ..     304     319 ..     257     371 .. 0.66

  Alignments for each domain:
  == domain 1  score: 59.0 bits;  conditional E-value: 2.6e-20
    HGSNAT_cat   1 RiweiDalRGlAlilMiifHf..lfdLeffgylevdla..sg...fwvlfarliaslFlfivGvslvlahskslrk....rkflkRglkilaaal.l 85 
                   R+ +iDalRGl ++ M++ H+  +f L+     ++d+a  ++   + +++a+l a +F+f+ G+s  l  +k++ +      ++kRgl ++a+ l l
  VIMSS2199720  10 RLHSIDALRGLVMLFMLLDHVreTFFLHRQVGDPMDVAstEPalfLSRTLAHLCAPVFVFLTGLSAFLYGEKHQGRravsAFLFKRGLFLVALELtL 106
                   8999****************74445555554444555432441113445667899*************98887777666444568887666665513 PP

    HGSNAT_cat  86 itavtylvfpesfivFGiLhlialasllallflrlpkllllllallilalglllkealfdtp...lllwlglss.......ekfstlDyvplfPWlg 172
                   ++++ ++ +p ++i+  ++  i+l++l   ++l lp++ll++l++l++a + ll+   f +    +l w  l++       +  +    +pl+PW+g
  VIMSS2199720 107 VNFAWTFQLPPTVIYLQVIWAIGLSMLALAALLWLPRPLLAALGVLLVAGHNLLDPLHFAPGsawHLPWAVLHDrgwieagDALRLRTSYPLLPWIG 203
                   3344447899**************************************99999988766554444566666666666666667788899******** PP

    HGSNAT_cat 173 vvllGialgkllykk 187
                   v+ lG+a+g+++   
  VIMSS2199720 204 VIALGYAAGNWFSGA 218
                   **********99755 PP

  == domain 2  score: -0.9 bits;  conditional E-value: 0.055
    HGSNAT_cat 205 vlallGrhsLliYlih 220
                   +l+ +G   +++Yl+h
  VIMSS2199720 304 ALVAFGGAPMFFYLLH 319
                   3333333444444443 PP



Or compare VIMSS2199720 to CDD or PaperBLAST