PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS6578536 to PF08592 (DUF1772)

VIMSS6578536 has 160 amino acids

Query:       DUF1772  [M=137]
Accession:   PF08592.11
Description: Domain of unknown function (DUF1772)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    3.2e-26   78.5   0.2    4.1e-26   78.2   0.2    1.0  1  VIMSS6578536  


Domain annotation for each sequence (and alignments):
>> VIMSS6578536  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   78.2   0.2   4.1e-26   4.1e-26       1     135 [.      20     154 ..      20     155 .. 0.89

  Alignments for each domain:
  == domain 1  score: 78.2 bits;  conditional E-value: 4.1e-26
       DUF1772   1 GlilafslfvvPallslpassslllkqwrrlfkrgkavfpplallsalafayla..araasrgarllylaaaal.lllsivpyTllvmvP.tNnkLa 93 
                   G+i++++  v Pa+l  pa+   +l qw+ +++ gk+ fp+la++ al+ +yl+   r++s  +++ly+++a+  l+  i+p+Tll+m++ +N +L+
  VIMSS6578536  20 GAIAYITSQVLPAILIGPADV--ALAQWKYIYSMGKKSFPFLAIANALVQGYLSysERKRSIFSSKLYAISALSgLC--IIPFTLLFMKKdIN-SLQ 111
                   89****************999..99**************************999999999999*****776666666..*********99666.778 PP

       DUF1772  94 alk.eedakekedeaevrellerWgrlnlvRavlalaaavlgl 135
                   +l+ +   k  +  ++ r+ ++rWg  nl+R+++++ ++++ +
  VIMSS6578536 112 TLNpDLILKDVKATQNFRSIIHRWGFKNLFRSAFMFFSGLASI 154
                   8866666666777799999999**************9999865 PP



Or compare VIMSS6578536 to CDD or PaperBLAST